8QH2 | pdb_00008qh2

Crystal structure of chimeric UAP1L1

PDB DOI: https://doi.org/10.2210/pdb8QH2/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-09-06 Released: 2024-09-18
Deposition Author(s): Chen, X., Yan, K., Bartual, S., van Aalten, D.
Funding Organization(s): Wellcome Trust, Novo Nordisk Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free:
0.283 (Depositor), 0.294 (DCC)
R-Value Work:
0.233 (Depositor)
R-Value Observed:
0.235 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8QH2

This is version 1.1 of the entry. See complete history.

Literature

UAP1L1 is an active pyrophosphorylase with an active site disulfide regulating protein thermostability

Chen, X., Yan, K., Bartual, S., Ferenbach, A., van Aalten, D.

To be published.

Macromolecule Content

Total Structure Weight: 57.71 kDa
Atom Count: 3,810
Modeled Residue Count: 476
Deposited Residue Count: 510
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-N-acetylhexosamine pyrophosphorylase,UDP-N-acetylhexosamine pyrophosphorylase-like protein 1	A	510	Homo sapiens	Mutation(s): 0 Gene Names: UAP1, SPAG2, UAP1L1 EC: 2.7.7.83 (PDB Primary Data), 2.7.7.23 (PDB Primary Data), 2.7.7 (PDB Primary Data), 2.7.4 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q16222 (Homo sapiens) Explore Q16222 Go to UniProtKB: Q16222
PHAROS: Q16222 GTEx: ENSG00000117143
Find proteins for Q3KQV9 (Homo sapiens) Explore Q3KQV9 Go to UniProtKB: Q3KQV9
PHAROS: Q3KQV9 GTEx: ENSG00000197355
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	Q3KQV9 Q16222
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.283 (Depositor), 0.294 (DCC)
R-Value Work: 0.233 (Depositor)
R-Value Observed: 0.235 (Depositor)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 113.523	α = 90
b = 113.523	β = 90
c = 43.966	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-18

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	110061
Novo Nordisk Foundation	Denmark	NNF21OC0065969

Revision History (Full details and data files)

Version 1.0: 2024-09-18
Type: Initial release
Version 1.1: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.