8QFT

X-ray structure of non-toxic non-hemagglutinin (NTNH) protein from botulinum neurotoxin serotype X


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.333 
  • R-Value Work: 0.276 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Activity of botulinum neurotoxin X and its structure when shielded by a non-toxic non-hemagglutinin protein.

Martinez-Carranza, M.Skerlova, J.Lee, P.G.Zhang, J.Krc, A.Sirohiwal, A.Burgin, D.Elliott, M.Philippe, J.Donald, S.Hornby, F.Henriksson, L.Masuyer, G.Kaila, V.R.I.Beard, M.Dong, M.Stenmark, P.

(2024) Commun Chem 7: 179-179

  • DOI: https://doi.org/10.1038/s42004-024-01262-8
  • Primary Citation of Related Structures:  
    8QFT

  • PubMed Abstract: 

    Botulinum neurotoxins (BoNTs) are the most potent toxins known and are used to treat an increasing number of medical disorders. All BoNTs are naturally co-expressed with a protective partner protein (NTNH) with which they form a 300 kDa complex, to resist acidic and proteolytic attack from the digestive tract. We have previously identified a new botulinum neurotoxin serotype, BoNT/X, that has unique and therapeutically attractive properties. We present the cryo-EM structure of the BoNT/X-NTNH/X complex and the crystal structure of the isolated NTNH protein. Unexpectedly, the BoNT/X complex is stable and protease-resistant at both neutral and acidic pH and disassembles only in alkaline conditions. Using the stabilizing effect of NTNH, we isolated BoNT/X and showed that it has very low potency both in vitro and in vivo. Given the high catalytic activity and translocation efficacy of BoNT/X, low activity of the full toxin is likely due to the receptor-binding domain, which presents very weak ganglioside binding and exposed hydrophobic surfaces.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
non-toxic non-hemagglutinin protein X1,174Clostridium botulinumMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.30 Å
  • R-Value Free: 0.333 
  • R-Value Work: 0.276 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 174.106α = 90
b = 174.106β = 90
c = 138.023γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
DIALSdata reduction
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2018-03406
Swedish Research CouncilSweden2022-03681
European Regional Development FundEuropean UnionCZ.02.2.69/0.0/0.0/16_027/0008477

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-14
    Type: Initial release
  • Version 1.1: 2024-08-28
    Changes: Database references