8Q78

Structure of the FP specific VHH TPP-3077

• PDB DOI: https://doi.org/10.2210/pdb8Q78/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Lama glama
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-08-15 Released: 2024-08-28 
• Deposition Author(s): Andersen, G.R., Pedersen, D.V.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.23 Å
• R-Value Free: 0.192 
• R-Value Work: 0.168 

Starting Model: experimental

Literature

Structure of the FP specific VHH TPP-3077

Andersen, G.R., Pedersen, D.V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors.

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 assigned by authors.

Biological Assembly 7  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 7 assigned by authors.

Biological Assembly 8  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 8 assigned by authors.

Macromolecule Content

• Total Structure Weight: 110.91 kDa 
• Atom Count: 8,770 
• Modelled Residue Count: 968 
• Deposited Residue Count: 1,000 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TPP-3077 VHH	A, B, C, D, E, F, G, H	125	Lama glama	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MPD (Subject of Investigation/LOI)	I [auth A], J [auth C], K [auth E], L [auth F]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.23 Å
• R-Value Free: 0.192 
• R-Value Work: 0.168 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.727	α = 90.03
b = 53.611	β = 90.02
c = 100.77	γ = 64.79

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-28 
Deposition Author(s): Andersen, G.R., Pedersen, D.V.

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2024-08-28
  Type: Initial release