Download MendeleyDirectionality of Optical Properties of Fluorescent Proteins
Myskova, J., Brynda, J., Khoroshyy, P., Lazar, J.To be published.
8Q6W
LSSmOrange - Directionality of Optical Properties of Fluorescent Proteins
- PDB DOI: https://doi.org/10.2210/pdb8Q6W/pdb
- Classification: FLUORESCENT PROTEIN
- Organism(s): Discosoma sp.
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-08-15 Released: 2024-08-28
- Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic, Czech Science Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.43 Å
- R-Value Free: 0.181
- R-Value Work: 0.134
- R-Value Observed: 0.136
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| mOrange | 242 | Discosoma sp. | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for D0VWW2 (Discosoma sp.) Explore D0VWW2 Go to UniProtKB: D0VWW2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0VWW2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | B [auth A], C [auth A], F [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | E [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | G [auth A], H [auth A], I [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ACT Query on ACT | D [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.43 Å
- R-Value Free: 0.181
- R-Value Work: 0.134
- R-Value Observed: 0.136
- Space Group: P 31
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.09 | α = 90 |
| b = 68.09 | β = 90 |
| c = 41.02 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Aimless | data scaling |
| CrysalisPro | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Myskova, J., Brynda, J., Lazar, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | CZ.02.1.01/0.0/0.0/16_019/0000729 |
| Czech Science Foundation | Czech Republic | 23-05983S |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release
