8Q5H

Human KMN network (outer kinetochore)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the human KMN complex and implications for regulation of its assembly.

Polley, S.Raisch, T.Ghetti, S.Korner, M.Terbeck, M.Grater, F.Raunser, S.Aponte-Santamaria, C.Vetter, I.R.Musacchio, A.

(2024) Nat Struct Mol Biol 31: 861-873

  • DOI: https://doi.org/10.1038/s41594-024-01230-9
  • Primary Citation of Related Structures:  
    8Q5H

  • PubMed Abstract: 

    Biorientation of chromosomes during cell division is necessary for precise dispatching of a mother cell's chromosomes into its two daughters. Kinetochores, large layered structures built on specialized chromosome loci named centromeres, promote biorientation by binding and sensing spindle microtubules. One of the outer layer main components is a ten-subunit assembly comprising Knl1C, Mis12C and Ndc80C (KMN) subcomplexes. The KMN is highly elongated and docks on kinetochores and microtubules through interfaces at its opposite extremes. Here, we combine cryogenic electron microscopy reconstructions and AlphaFold2 predictions to generate a model of the human KMN that reveals all intra-KMN interfaces. We identify and functionally validate two interaction interfaces that link Mis12C to Ndc80C and Knl1C. Through targeted interference experiments, we demonstrate that this mutual organization strongly stabilizes the KMN assembly. Our work thus reports a comprehensive structural and functional analysis of this part of the kinetochore microtubule-binding machinery and elucidates the path of connections from the chromatin-bound components to the force-generating components.


  • Organizational Affiliation

    Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein Spc24A [auth 4]89Homo sapiensMutation(s): 0 
Gene Names: SPC24SPBC24
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Find proteins for Q8NBT2 (Homo sapiens)
Explore Q8NBT2 
Go to UniProtKB:  Q8NBT2
PHAROS:  Q8NBT2
GTEx:  ENSG00000161888 
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UniProt GroupQ8NBT2
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein Spc25B [auth 5]139Homo sapiensMutation(s): 0 
Gene Names: SPC25SPBC25AD024
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Find proteins for Q9HBM1 (Homo sapiens)
Explore Q9HBM1 
Go to UniProtKB:  Q9HBM1
PHAROS:  Q9HBM1
GTEx:  ENSG00000152253 
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UniProt GroupQ9HBM1
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Protein MIS12 homologC [auth A]205Homo sapiensMutation(s): 0 
Gene Names: MIS12
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Find proteins for Q9H081 (Homo sapiens)
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PHAROS:  Q9H081
GTEx:  ENSG00000167842 
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UniProt GroupQ9H081
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Polyamine-modulated factor 1D [auth B]205Homo sapiensMutation(s): 0 
Gene Names: PMF1
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Find proteins for Q6P1K2 (Homo sapiens)
Explore Q6P1K2 
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PHAROS:  Q6P1K2
GTEx:  ENSG00000160783 
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UniProt GroupQ6P1K2
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein DSN1 homologE [auth D]362Homo sapiensMutation(s): 0 
Gene Names: DSN1C20orf172MIS13
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Find proteins for Q9H410 (Homo sapiens)
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PHAROS:  Q9H410
GTEx:  ENSG00000149636 
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UniProt GroupQ9H410
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore scaffold 1F [auth K]329Homo sapiensMutation(s): 0 
Gene Names: KNL1CASC5KIAA1570
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Find proteins for Q8NG31 (Homo sapiens)
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PHAROS:  Q8NG31
GTEx:  ENSG00000137812 
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UniProt GroupQ8NG31
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein NSL1 homologG [auth N]281Homo sapiensMutation(s): 0 
Gene Names: NSL1C1orf48DC31DC8MIS14
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Find proteins for Q96IY1 (Homo sapiens)
Explore Q96IY1 
Go to UniProtKB:  Q96IY1
PHAROS:  Q96IY1
GTEx:  ENSG00000117697 
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UniProt GroupQ96IY1
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-14
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Data collection, Database references