Download MendeleyHsNMT1 in complex with both MyrCoA and Dab-SFSKPR inhibitor peptide
Dian, C., Giglione, C., Meinnel, T., Riviere, F., Dutheil, F.R., Monassa, P.To be published.
8Q24
HsNMT1 in complex with both MyrCoA and (DAB)SFSKPR inhibitor peptide
- PDB DOI: https://doi.org/10.2210/pdb8Q24/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2023-08-01 Released: 2024-08-14
- Funding Organization(s): Agence Nationale de la Recherche (ANR), Fondation ARC, French Infrastructure for Integrated Structural Biology (FRISBI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215
- R-Value Work: 0.172
- R-Value Observed: 0.174
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycylpeptide N-tetradecanoyltransferase 1 | 402 | Homo sapiens | Mutation(s): 0 Gene Names: NMT1, NMT EC: 2.3.1.97 (PDB Primary Data), 2.3.1 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P30419 (Homo sapiens) Explore P30419 Go to UniProtKB: P30419 | |||||
PHAROS: P30419 GTEx: ENSG00000136448 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P30419 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| DAB-SER-PHE-SER-LYS-PRO-ARG | C [auth E], D [auth C] | 7 | Homo sapiens | Mutation(s): 0 |  |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MYA (Subject of Investigation/LOI) Query on MYA | E [auth A], J [auth B] | TETRADECANOYL-COA C35 H62 N7 O17 P3 S DUAFKXOFBZQTQE-QSGBVPJFSA-N |  | ||
| GOL Query on GOL | F [auth A], G [auth A], K [auth B], L [auth B], M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth A], I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DAB Query on DAB | C [auth E], D [auth C] | L-PEPTIDE LINKING | C4 H10 N2 O2 |  | ALA |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.215
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.739 | α = 90 |
| b = 177.986 | β = 90 |
| c = 58.266 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-14 Deposition Author(s): Dian, C., Giglione, C., Meinnel, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Agence Nationale de la Recherche (ANR) | France | ANR-20-CE44-0013 |
| Agence Nationale de la Recherche (ANR) | France | ANR-2010-BLAN-1611-01 |
| Fondation ARC | France | ARCPJA32020060002137 |
| French Infrastructure for Integrated Structural Biology (FRISBI) | France | ANR-10-INSB-05-01 |
Revision History (Full details and data files)
- Version 1.0: 2024-08-14
Type: Initial release - Version 1.1: 2024-11-06
Changes: Structure summary
