Crystal structures of Endothiapepsin with ligands derived from merged fragment hits
Mueller, J.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Endothiapepsin | 330 | Cryphonectria parasitica | Mutation(s): 0  EC: 3.4.23.22 | ![]() | |
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838  Go to UniProtKB:  P11838 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IJ9 (Subject of Investigation/LOI) Query on IJ9 | C [auth A] | (3~{R},5~{R})-5-[3-(4-bromophenyl)-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol C20 H20 Br N5 O2 S JXDHMKNOEOYBOX-FOIQADDNSA-N | |||
MPD Query on MPD | D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
DMS Query on DMS | B [auth A], E [auth A], F [auth A], I [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ACT Query on ACT | G [auth A], H [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 44.855 | α = 90 |
b = 72.626 | β = 109.2 |
c = 52.432 | γ = 90 |
Software Name | Purpose |
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Coot | model building |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |