Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with natural substrate
de Munnik, M., Schofield, C.J.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
L,D-transpeptidase 2 | 355 | Mycobacterium tuberculosis | Mutation(s): 0  Gene Names: ldtB, MT2594, V735_02606 EC: 2.3.2 | ![]() | |
UniProt | |||||
Find proteins for O53223 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)) Explore O53223  Go to UniProtKB:  O53223 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O53223 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
I36 (Subject of Investigation/LOI) Query on I36 | E [auth A] | (2~{R})-2-[[(2~{S},6~{R})-6,7-bis(azanyl)-2-[[(4~{R})-4,5-bis(azanyl)-5-oxidanylidene-pentanoyl]amino]-7-oxidanylidene-heptanoyl]amino]propanoic acid C15 H28 N6 O6 CJJCRMCFCZMAJA-KYXWUPHJSA-N | |||
I1V (Subject of Investigation/LOI) Query on I1V | B [auth A] | (2~{R})-2-azanyl-~{N}'-[(2~{S},6~{R})-6,7-bis(azanyl)-1-oxidanyl-7-oxidanylidene-heptan-2-yl]pentanediamide C12 H25 N5 O4 JJMJHAUQDTZOGG-DJLDLDEBSA-N | |||
DAL Query on DAL | D [auth A] | D-ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-UWTATZPHSA-N | |||
EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 77.12 | α = 90 |
b = 95.83 | β = 90 |
c = 59.23 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
xia2 | data scaling |
XDS | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | -- |