8PUM

Tha1 L-threonine aldolase (mouse), monoclinic form (C2)

PDB DOI: https://doi.org/10.2210/pdb8PUM/pdb

Classification: LYASE
Organism(s): Mus musculus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-07-17 Released: 2024-03-20
Deposition Author(s): Battistutta, R., Fornasier, E., Giachin, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.259
R-Value Work: 0.234
R-Value Observed: 0.235

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Tha1 L-threonine aldolase (mouse), monoclinic form (C2)

Battistutta, R., Fornasier, E., Giachin, G.

To be published.

Macromolecule Content

Total Structure Weight: 83.61 kDa
Atom Count: 5,567
Modelled Residue Count: 724
Deposited Residue Count: 764
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-threonine aldolase	A, B	382	Mus musculus	Mutation(s): 0 Gene Names: Tha1, Gly1
UniProt
Find proteins for Q6XPS7 (Mus musculus) Explore Q6XPS7 Go to UniProtKB: Q6XPS7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6XPS7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
LLP Query on LLP	A, B	L-PEPTIDE LINKING	C₁₄ H₂₂ N₃ O₇ P		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.259
R-Value Work: 0.234
R-Value Observed: 0.235
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.975	α = 90
b = 101.639	β = 116.14
c = 95.958	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
PHASER	phasing
Aimless	data scaling

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-20

Deposition Author(s):

Battistutta, R.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-03-20
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.