8PPQ

Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer

  • Classification: VIRUS
  • Organism(s): Tick-borne encephalitis virus
  • Mutation(s): Yes 

  • Deposited: 2023-07-07 Released: 2024-06-12 
  • Deposition Author(s): Anastasina, M., Domanska, A., Pulkkinen, L.I.A., Butcher, S.J.
  • Funding Organization(s): Swedish Research Council, Academy of Finland, Sigrid Juselius Foundation, Jane and Aatos Erkko Foundation, H2020 Marie Curie Actions of the European Commission, University of Helsinki Research Foundation, University of Helsinki

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The structure of immature tick-borne encephalitis virus supports the collapse model of flavivirus maturation.

Anastasina, M.Fuzik, T.Domanska, A.Pulkkinen, L.I.A.Smerdova, L.Formanova, P.P.Strakova, P.Novacek, J.Ruzek, D.Plevka, P.Butcher, S.J.

(2024) Sci Adv 10: eadl1888-eadl1888

  • DOI: https://doi.org/10.1126/sciadv.adl1888
  • Primary Citation of Related Structures:  
    8PPQ, 8PUV

  • PubMed Abstract: 

    We present structures of three immature tick-borne encephalitis virus (TBEV) isolates. Our atomic models of the major viral components, the E and prM proteins, indicate that the pr domains of prM have a critical role in holding the heterohexameric prM3E3 spikes in a metastable conformation. Destabilization of the prM furin-sensitive loop at acidic pH facilitates its processing. The prM topology and domain assignment in TBEV is similar to the mosquito-borne Binjari virus, but is in contrast to other immature flavivirus models. These results support that prM cleavage, the collapse of E protein ectodomains onto the virion surface, the large movement of the membrane domains of both E and M, and the release of the pr fragment from the particle render the virus mature and infectious. Our work favors the collapse model of flavivirus maturation warranting further studies of immature flaviviruses to determine the sequence of events and mechanistic details driving flavivirus maturation.


  • Organizational Affiliation

    Faculty of Biological and Environmental Sciences, Molecular and Integrative Bioscience Research Programme, University of Helsinki, Helsinki, Finland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope protein E
A, B, C
496Tick-borne encephalitis virusMutation(s): 1 
UniProt
Find proteins for P14336 (Tick-borne encephalitis virus European subtype (strain Neudoerfl))
Explore P14336 
Go to UniProtKB:  P14336
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14336
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein prMD [auth a],
E [auth b],
F [auth c]
163Tick-borne encephalitis virusMutation(s): 0 
UniProt
Find proteins for P14336 (Tick-borne encephalitis virus European subtype (strain Neudoerfl))
Explore P14336 
Go to UniProtKB:  P14336
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14336
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.2.1
MODEL REFINEMENTISOLDE1.6.0
MODEL REFINEMENTPHENIX1.20.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2018-05851
Academy of FinlandFinland315950
Sigrid Juselius FoundationFinland95-7202-38
Jane and Aatos Erkko FoundationFinland--
H2020 Marie Curie Actions of the European CommissionEuropean Union799929
University of Helsinki Research FoundationFinland--
University of HelsinkiFinland--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-12
    Type: Initial release
  • Version 1.1: 2024-07-17
    Changes: Data collection, Database references