8POC

Cryo-EM structure of Dickeya dadantii BcsD


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structures and roles of BcsD and partner scaffold proteins in proteobacterial cellulose secretion.

Sana, T.G.Notopoulou, A.Puygrenier, L.Decossas, M.Moreau, S.Carlier, A.Krasteva, P.V.

(2024) Curr Biol 34: 106

  • DOI: https://doi.org/10.1016/j.cub.2023.11.057
  • Primary Citation of Related Structures:  
    8PKD, 8POC, 8POG

  • PubMed Abstract: 

    Cellulose is the world's most abundant biopolymer, and similar to its role as a cell wall component in plants, it is a prevalent constituent of the extracellular matrix in bacterial biofilms. Although bacterial cellulose (BC) was first described in the 19 th century, it was only recently revealed that it is produced by several distinct types of Bcs secretion systems that feature multiple accessory subunits in addition to a catalytic BcsAB synthase tandem. We recently showed that crystalline cellulose secretion in the Gluconacetobacter genus (α-Proteobacteria) is driven by a supramolecular BcsH-BcsD scaffold-the "cortical belt"-which stabilizes the synthase nanoarrays through an unexpected inside-out mechanism for secretion system assembly. Interestingly, while bcsH is specific for Gluconacetobacter, bcsD homologs are widespread in Proteobacteria. Here, we examine BcsD homologs and their gene neighborhoods from several plant-colonizing β- and γ-Proteobacteria proposed to secrete a variety of non-crystalline and/or chemically modified cellulosic polymers. We provide structural and mechanistic evidence that through different quaternary structure assemblies BcsD acts with proline-rich BcsH, BcsP, or BcsO partners across the proteobacterial clade to form synthase-interacting intracellular scaffolds that, in turn, determine the biofilm strength and architecture in species with strikingly different physiology and secreted biopolymers.


  • Organizational Affiliation

    Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, Pessac 33600, France; "Structural Biology of Biofilms" Group, European Institute of Chemistry and Biology (IECB), 2 Rue Robert Escarpit, Pessac 33600, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cellulose synthase operon protein D
A, B, C, D
158Dickeya dadantii 3937Mutation(s): 0 
Gene Names: bcsD
UniProt
Find proteins for E0SES7 (Dickeya dadantii (strain 3937))
Explore E0SES7 
Go to UniProtKB:  E0SES7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE0SES7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union757507

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-01-03
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Database references