8PK4

Cryo EM structure of the type 5A polymorph of alpha-synuclein.

PDB DOI: https://doi.org/10.2210/pdb8PK4/pdb
EM Map EMD-17726: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-06-24 Released: 2024-05-29
Deposition Author(s): Frey, L., Qureshi, B.M., Kwiatkowski, W., Rhyner, D., Greenwald, J., Riek, R.
Funding Organization(s): Swiss National Science Foundation, Other government

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

On the pH-dependence of alpha-synuclein amyloid polymorphism and the role of secondary nucleation in seed-based amyloid propagation

Frey, L., Ghosh, D., Qureshi, B.M., Rhyner, D., Pokharna, A., Guerrero-Ferreira, R., Kwiatkowski, W., Serdiuk, T., Picotti, P., Riek, R., Greenwald, J.

(2023) Elife

DOI: https://doi.org/10.7554/eLife.93562.1

Macromolecule Content

Total Structure Weight: 145.18 kDa
Atom Count: 6,690
Modelled Residue Count: 960
Deposited Residue Count: 1,400
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	4.0.0

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-29

Deposition Author(s):

Kwiatkowski, W.

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	--
Other government		--

Revision History (Full details and data files)

Version 1.0: 2024-05-29
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.