8PJD

Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 94-445

• PDB DOI: https://doi.org/10.2210/pdb8PJD/pdb

• Classification: TRANSFERASE
• Organism(s): Mus musculus
• Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
• Mutation(s): No 


• Deposited: 2023-06-23 Released: 2024-07-10 
• Deposition Author(s): Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.189 
• R-Value Work: 0.171 
• R-Value Observed: 0.172 

Starting Model: experimental

Literature

Crystal Structure of Mus musculus Protein Arginine Methyltransferase 2 94-445

Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: mass spectrometry

Macromolecule Content

• Total Structure Weight: 41.29 kDa 
• Atom Count: 3,230 
• Modelled Residue Count: 347 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein arginine N-methyltransferase 2	A	356	Mus musculus	Mutation(s): 0  Gene Names: Prmt2, Hrmt1l1
UniProt
Find proteins for Q3UKX1 (Mus musculus) Explore Q3UKX1  Go to UniProtKB:  Q3UKX1

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SAH (Subject of Investigation/LOI)	B [auth A]	S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N
ACT	C [auth A], D [auth A], E [auth A], F [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M
NA	G [auth A], H [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 0.189 
• R-Value Work: 0.171 
• R-Value Observed: 0.172 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.052	α = 90
b = 115.98	β = 90
c = 133.718	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-10 
Deposition Author(s): Cura, V., Troffer-Charlier, N., Marechal, N., Bonnefond, L., Cavarelli, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-07-10
  Type: Initial release