Download MendeleyStructural basis for spacer acquisition in a type II-A CRISPR-Cas system
Sasnauskas, G., Gaizauskaite, U., Tamulaitiene, G.To be published.
8PJ9
Cas9 bound to cognate DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system
- PDB DOI: https://doi.org/10.2210/pdb8PJ9/pdb
- EM Map EMD-17702: EMDB EMDataResource
- NAKB: 8PJ9
- Classification: RNA BINDING PROTEIN
- Organism(s): Streptococcus thermophilus DGCC 7710, synthetic construct
- Expression System: Escherichia coli str. K-12 substr. DH10B
- Mutation(s): No
- Deposited: 2023-06-23 Released: 2024-07-10
- Funding Organization(s): Research Council of Lithuania
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.24 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Starting Model: in silico
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wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CRISPR-associated endonuclease Cas9 | 1,397 | Streptococcus thermophilus DGCC 7710 | Mutation(s): 0 Gene Names: cas9, csn1 EC: 3.1 |  | |
UniProt | |||||
Find proteins for G3ECR1 (Streptococcus thermophilus) Explore G3ECR1 Go to UniProtKB: G3ECR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G3ECR1 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| crRNA, chain B | 42 | Streptococcus thermophilus DGCC 7710 |  | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| tracrRNA, chain C | 75 | Streptococcus thermophilus DGCC 7710 |  | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA oligoduplex, target strand, chains D,E | 32 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA oligoduplex, non-target strand, chain F | 12 | synthetic construct |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | G [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.24 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 4.1.1 |
| MODEL REFINEMENT | PHENIX | 1.21rc1_4903 |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-07-10 Deposition Author(s): Sasnauskas, G., Gaizauskaite, U., Tamulaitiene, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Research Council of Lithuania | Lithuania | S-MIP-19-32 |
Revision History (Full details and data files)
- Version 1.0: 2024-07-10
Type: Initial release
