8PEX

Rho P167L-ATPgS-Psu complex I

PDB DOI: https://doi.org/10.2210/pdb8PEX/pdb
EM Map EMD-17640: EMDB EMDataResource

Classification: GENE REGULATION
Organism(s): Escherichia coli, Enterobacteria phage P4
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-06-15 Released: 2024-06-26
Deposition Author(s): Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rho P167L-ATPgS-Psu complex I

Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.

To be published.

Macromolecule Content

Total Structure Weight: 785.54 kDa
Atom Count: 54,751
Modelled Residue Count: 6,898
Deposited Residue Count: 6,928
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription termination factor Rho	A B C D E A, B, C, D, E, F, G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], L [auth N]	419	Escherichia coli	Mutation(s): 1 Gene Names: rho, nitA, psuA, rnsC, sbaA, tsu, b3783, JW3756 EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12)) Explore P0AG30 Go to UniProtKB: P0AG30
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG30
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Polarity suppression protein	M [auth a] N [auth b] O [auth c] P [auth d] Q [auth e] M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j]	190	Enterobacteria phage P4	Mutation(s): 0 Gene Names: psu
UniProt
Find proteins for P05460 (Enterobacteria phage P4) Explore P05460 Go to UniProtKB: P05460
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05460
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS Query on AGS Download Ideal Coordinates CCD File SDF format, chain AA [auth C] SDF format, chain CA [auth D] SDF format, chain EA [auth E] SDF format, chain GA [auth F] SDF format, chain IA [auth I] SDF format, chain KA [auth J] SDF format, chain MA [auth K] SDF format, chain OA [auth L] SDF format, chain QA [auth M] SDF format, chain SA [auth N] SDF format, chain W [auth A] SDF format, chain Y [auth B] MOL2 format, chain AA [auth C] MOL2 format, chain CA [auth D] MOL2 format, chain EA [auth E] MOL2 format, chain GA [auth F] MOL2 format, chain IA [auth I] MOL2 format, chain KA [auth J] MOL2 format, chain MA [auth K] MOL2 format, chain OA [auth L] MOL2 format, chain QA [auth M] MOL2 format, chain SA [auth N] MOL2 format, chain W [auth A] MOL2 format, chain Y [auth B] mmCIF format, chain AA [auth C] mmCIF format, chain CA [auth D] mmCIF format, chain EA [auth E] mmCIF format, chain GA [auth F] mmCIF format, chain IA [auth I] mmCIF format, chain KA [auth J] mmCIF format, chain MA [auth K] mmCIF format, chain OA [auth L] mmCIF format, chain QA [auth M] mmCIF format, chain SA [auth N] mmCIF format, chain W [auth A] mmCIF format, chain Y [auth B]	AA [auth C] CA [auth D] EA [auth E] GA [auth F] IA [auth I] AA [auth C], CA [auth D], EA [auth E], GA [auth F], IA [auth I], KA [auth J], MA [auth K], OA [auth L], QA [auth M], SA [auth N], W [auth A], Y [auth B]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain AA [auth C] Focus chain CA [auth D] Focus chain EA [auth E] Focus chain GA [auth F] Focus chain IA [auth I] Focus chain KA [auth J] Focus chain MA [auth K] Focus chain OA [auth L] Focus chain QA [auth M] Focus chain SA [auth N] Focus chain W [auth A] Focus chain Y [auth B] Interactions & Density Focus chain AA [auth C] Focus chain CA [auth D] Focus chain EA [auth E] Focus chain GA [auth F] Focus chain IA [auth I] Focus chain KA [auth J] Focus chain MA [auth K] Focus chain OA [auth L] Focus chain QA [auth M] Focus chain SA [auth N] Focus chain W [auth A] Focus chain Y [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain BA [auth C] SDF format, chain DA [auth D] SDF format, chain FA [auth E] SDF format, chain HA [auth F] SDF format, chain JA [auth I] SDF format, chain LA [auth J] SDF format, chain NA [auth K] SDF format, chain PA [auth L] SDF format, chain RA [auth M] SDF format, chain TA [auth N] SDF format, chain X [auth A] SDF format, chain Z [auth B] MOL2 format, chain BA [auth C] MOL2 format, chain DA [auth D] MOL2 format, chain FA [auth E] MOL2 format, chain HA [auth F] MOL2 format, chain JA [auth I] MOL2 format, chain LA [auth J] MOL2 format, chain NA [auth K] MOL2 format, chain PA [auth L] MOL2 format, chain RA [auth M] MOL2 format, chain TA [auth N] MOL2 format, chain X [auth A] MOL2 format, chain Z [auth B] mmCIF format, chain BA [auth C] mmCIF format, chain DA [auth D] mmCIF format, chain FA [auth E] mmCIF format, chain HA [auth F] mmCIF format, chain JA [auth I] mmCIF format, chain LA [auth J] mmCIF format, chain NA [auth K] mmCIF format, chain PA [auth L] mmCIF format, chain RA [auth M] mmCIF format, chain TA [auth N] mmCIF format, chain X [auth A] mmCIF format, chain Z [auth B]	BA [auth C] DA [auth D] FA [auth E] HA [auth F] JA [auth I] BA [auth C], DA [auth D], FA [auth E], HA [auth F], JA [auth I], LA [auth J], NA [auth K], PA [auth L], RA [auth M], TA [auth N], X [auth A], Z [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BA [auth C] Focus chain DA [auth D] Focus chain FA [auth E] Focus chain HA [auth F] Focus chain JA [auth I] Focus chain LA [auth J] Focus chain NA [auth K] Focus chain PA [auth L] Focus chain RA [auth M] Focus chain TA [auth N] Focus chain X [auth A] Focus chain Z [auth B] Interactions & Density Focus chain BA [auth C] Focus chain DA [auth D] Focus chain FA [auth E] Focus chain HA [auth F] Focus chain JA [auth I] Focus chain LA [auth J] Focus chain NA [auth K] Focus chain PA [auth L] Focus chain RA [auth M] Focus chain TA [auth N] Focus chain X [auth A] Focus chain Z [auth B]