8PEW

Rho-ATPgS-Psu complex II

PDB DOI: https://doi.org/10.2210/pdb8PEW/pdb
EM Map EMD-17639: EMDB EMDataResource

Classification: GENE REGULATION
Organism(s): Escherichia coli, Enterobacteria phage P4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-06-15 Released: 2024-06-26
Deposition Author(s): Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.30 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rho-ATPgS-Psu complex II

Gjorgjevikj, D., Wahl, M.C., Hilal, T., Loll, B.

To be published.

Macromolecule Content

Total Structure Weight: 1,198.31 kDa
Atom Count: 83,524
Modelled Residue Count: 10,534
Deposited Residue Count: 10,582
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription termination factor Rho	A B C D E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q [auth X], R [auth Y]	419	Escherichia coli	Mutation(s): 0 Gene Names: rho, AC789_1c41660, ACN002_3874, EL75_4398, EL79_4648, EL80_4555 EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12)) Explore P0AG30 Go to UniProtKB: P0AG30
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AG30
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Polarity suppression protein	AA [auth i] BA [auth j] CA [auth k] DA [auth l] EA [auth m] AA [auth i], BA [auth j], CA [auth k], DA [auth l], EA [auth m], FA [auth n], GA [auth o], HA [auth p], S [auth a], T [auth b], U [auth c], V [auth d], W [auth e], X [auth f], Y [auth g], Z [auth h]	190	Enterobacteria phage P4	Mutation(s): 0 Gene Names: psu
UniProt
Find proteins for P05460 (Enterobacteria phage P4) Explore P05460 Go to UniProtKB: P05460
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05460
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AGS Query on AGS Download Ideal Coordinates CCD File SDF format, chain AB [auth J] SDF format, chain CB [auth K] SDF format, chain EB [auth L] SDF format, chain GB [auth M] SDF format, chain IA [auth A] SDF format, chain IB [auth N] SDF format, chain KA [auth B] SDF format, chain KB [auth O] SDF format, chain MA [auth C] SDF format, chain MB [auth P] SDF format, chain OA [auth D] SDF format, chain QA [auth E] SDF format, chain SA [auth F] SDF format, chain UA [auth G] SDF format, chain WA [auth H] SDF format, chain YA [auth I] MOL2 format, chain AB [auth J] MOL2 format, chain CB [auth K] MOL2 format, chain EB [auth L] MOL2 format, chain GB [auth M] MOL2 format, chain IA [auth A] MOL2 format, chain IB [auth N] MOL2 format, chain KA [auth B] MOL2 format, chain KB [auth O] MOL2 format, chain MA [auth C] MOL2 format, chain MB [auth P] MOL2 format, chain OA [auth D] MOL2 format, chain QA [auth E] MOL2 format, chain SA [auth F] MOL2 format, chain UA [auth G] MOL2 format, chain WA [auth H] MOL2 format, chain YA [auth I]	AB [auth J] CB [auth K] EB [auth L] GB [auth M] IA [auth A] AB [auth J], CB [auth K], EB [auth L], GB [auth M], IA [auth A], IB [auth N], KA [auth B], KB [auth O], MA [auth C], MB [auth P], OA [auth D], QA [auth E], SA [auth F], UA [auth G], WA [auth H], YA [auth I]	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER C₁₀ H₁₆ N₅ O₁₂ P₃ S NLTUCYMLOPLUHL-KQYNXXCUSA-N		Interactions Focus chain AB [auth J] Focus chain CB [auth K] Focus chain EB [auth L] Focus chain GB [auth M] Focus chain IA [auth A] Focus chain IB [auth N] Focus chain KA [auth B] Focus chain KB [auth O] Focus chain MA [auth C] Focus chain MB [auth P] Focus chain OA [auth D] Focus chain QA [auth E] Focus chain SA [auth F] Focus chain UA [auth G] Focus chain WA [auth H] Focus chain YA [auth I] Interactions & Density Focus chain AB [auth J] Focus chain CB [auth K] Focus chain EB [auth L] Focus chain GB [auth M] Focus chain IA [auth A] Focus chain IB [auth N] Focus chain KA [auth B] Focus chain KB [auth O] Focus chain MA [auth C] Focus chain MB [auth P] Focus chain OA [auth D] Focus chain QA [auth E] Focus chain SA [auth F] Focus chain UA [auth G] Focus chain WA [auth H] Focus chain YA [auth I]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain BB [auth J] SDF format, chain DB [auth K] SDF format, chain FB [auth L] SDF format, chain HB [auth M] SDF format, chain JA [auth A] SDF format, chain JB [auth N] SDF format, chain LA [auth B] SDF format, chain LB [auth O] SDF format, chain NA [auth C] SDF format, chain NB [auth P] SDF format, chain PA [auth D] SDF format, chain RA [auth E] SDF format, chain TA [auth F] SDF format, chain VA [auth G] SDF format, chain XA [auth H] SDF format, chain ZA [auth I] MOL2 format, chain BB [auth J] MOL2 format, chain DB [auth K] MOL2 format, chain FB [auth L] MOL2 format, chain HB [auth M] MOL2 format, chain JA [auth A] MOL2 format, chain JB [auth N] MOL2 format, chain LA [auth B] MOL2 format, chain LB [auth O] MOL2 format, chain NA [auth C] MOL2 format, chain NB [auth P] MOL2 format, chain PA [auth D] MOL2 format, chain RA [auth E] MOL2 format, chain TA [auth F] MOL2 format, chain VA [auth G] MOL2 format, chain XA [auth H] MOL2 format, chain ZA [auth I]	BB [auth J] DB [auth K] FB [auth L] HB [auth M] JA [auth A] BB [auth J], DB [auth K], FB [auth L], HB [auth M], JA [auth A], JB [auth N], LA [auth B], LB [auth O], NA [auth C], NB [auth P], PA [auth D], RA [auth E], TA [auth F], VA [auth G], XA [auth H], ZA [auth I]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain BB [auth J] Focus chain DB [auth K] Focus chain FB [auth L] Focus chain HB [auth M] Focus chain JA [auth A] Focus chain JB [auth N] Focus chain LA [auth B] Focus chain LB [auth O] Focus chain NA [auth C] Focus chain NB [auth P] Focus chain PA [auth D] Focus chain RA [auth E] Focus chain TA [auth F] Focus chain VA [auth G] Focus chain XA [auth H] Focus chain ZA [auth I] Interactions & Density Focus chain BB [auth J] Focus chain DB [auth K] Focus chain FB [auth L] Focus chain HB [auth M] Focus chain JA [auth A] Focus chain JB [auth N] Focus chain LA [auth B] Focus chain LB [auth O] Focus chain NA [auth C] Focus chain NB [auth P] Focus chain PA [auth D] Focus chain RA [auth E] Focus chain TA [auth F] Focus chain VA [auth G] Focus chain XA [auth H] Focus chain ZA [auth I]