8PDZ | pdb_00008pdz

Recombinant Ena3A L-Type endospore appendages


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Helical ultrastructure of the L-ENA spore aggregation factor of a Bacillus paranthracis foodborne outbreak strain.

Sleutel, M.Zegeye, E.D.Llarena, A.K.Pradhan, B.Fislage, M.O'Sullivan, K.Van Gerven, N.Aspholm, M.Remaut, H.

(2024) Nat Commun 15: 7514-7514

  • DOI: https://doi.org/10.1038/s41467-024-51804-w
  • Primary Citation of Related Structures:  
    8PDZ

  • PubMed Abstract: 

    In pathogenic Bacillota, spores can form an infectious particle and can take up a central role in the environmental persistence and dissemination of disease. A poorly understood aspect of spore-mediated infection is the fibrous structures or 'endospore appendages' (ENAs) that have been seen to decorate the spores of pathogenic Bacilli and Clostridia. Current methodological approaches are opening a window on these long enigmatic structures. Using cryoID, Alphafold modelling and genetic approaches we identify a sub-class of robust ENAs in a Bacillus paranthracis foodborne outbreak strain. We demonstrate that L-ENA are encoded by a rare three-gene cluster (ena3) that contains all components for the self-assembly of ladder-like protein nanofibers of stacked heptameric rings, their anchoring to the exosporium, and their termination in a trimeric 'ruffle' made of a complement C1Q-like BclA paralogue. The role of ENA fibers in spore-spore interaction and the distribution of L-ENA operon as mobile genetic elements in B. cereus s.l. strains suggest that L-ENA fibers may increase the survival, spread and virulence of these strains.


  • Organizational Affiliation
    • Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium. Mike.Sleutel@vub.be.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DUF3992 domain-containing protein114Bacillus paranthracisMutation(s): 0 
Gene Names: AT268_06065AT274_24635BKK64_18030CQZ91_26150FOC96_02480FOC96_16350FOC96_31100TU58_22910
UniProt
Find proteins for A0A0J6Z5T8 (Bacillus cereus)
Explore A0A0J6Z5T8 
Go to UniProtKB:  A0A0J6Z5T8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0J6Z5T8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.32 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.0.3
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Foundation - Flanders (FWO)BelgiumG0G0818N

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-07-09
    Changes: Data collection
  • Version 1.3: 2025-09-10
    Changes: Data collection, Database references