8P6A

cryo-EM structure of human SLC15A4 in outward-open state

PDB DOI: https://doi.org/10.2210/pdb8P6A/pdb
EM Map EMD-17462: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2023-05-25 Released: 2023-06-07
Deposition Author(s): Parker, J.L., Kato, T., Newstead, S.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

cryo-EM structure of human SLC15A4 PHT1 in outward-open state

Parker, J.L., Kato, T., Newstead, S.

To be published.

Macromolecule Content

Total Structure Weight: 63.33 kDa
Atom Count: 3,337
Modelled Residue Count: 432
Deposited Residue Count: 587
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Solute carrier family 15 member 4	A	587	Homo sapiens	Mutation(s): 0 Gene Names: SLC15A4, PHT1, PTR4, FP12591 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N697 (Homo sapiens) Explore Q8N697 Go to UniProtKB: Q8N697
PHAROS: Q8N697 GTEx: ENSG00000139370
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8N697
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.63 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-06-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	215519/Z/19/Z
Wellcome Trust	United Kingdom	219531/Z/19/Z

Revision History (Full details and data files)

Version 1.0: 2023-06-07
Type: Initial release
Version 1.1: 2024-07-24
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.