8P2E

Homotypic interacting B1 fab bound to Chondroitin Sulfate A

PDB DOI: https://doi.org/10.2210/pdb8P2E/pdb
EM Map EMD-17362: EMDB EMDataResource

Classification: SUGAR BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Cricetulus griseus
Mutation(s): No

Deposited: 2023-05-16 Released: 2024-06-05
Deposition Author(s): Raghavan, S.S.R., Dagil, R., Wang, K.T., Salanti, A.
Funding Organization(s): Novo Nordisk Foundation, The Carlsberg Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of homotypic B1 fabs bound to Chondroiting Sulfate A

Raghavan, S.S.R., Vidal-Calvo, E.E., Dagil, R., Wang, K.T., Salanti, A.

To be published.

Macromolecule Content

Total Structure Weight: 200.33 kDa
Atom Count: 12,786
Modelled Residue Count: 1,691
Deposited Residue Count: 1,868
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
B1 fab light	A, C, E, G	223	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
B1 fab heavy	B, D, F, H	244	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-05

Deposition Author(s):

Raghavan, S.S.R.

Funding Organization	Location	Grant Number
Novo Nordisk Foundation	Denmark	NNF22OC0076055
Novo Nordisk Foundation	Denmark	NNF21OC0068192
The Carlsberg Foundation	Denmark	CF20-0045

Revision History (Full details and data files)

Version 1.0: 2024-06-05
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.