8P0K

Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex, module 2 of capping enzyme mobile


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)

Grimm, C.Jungwirth, S.Fischer, U.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 147 kDa polypeptide1,286Vaccinia virusMutation(s): 3 
Gene Names: OPG105RPO147J6R
EC: 2.7.7.6
UniProt
Find proteins for P20504 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP20504
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 133 kDa polypeptide1,164Vaccinia virusMutation(s): 2 
Gene Names: OPG151RPO132A24R
EC: 2.7.7.6
UniProt
Find proteins for P68694 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68694
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 35 kDa subunit305Vaccinia virusMutation(s): 1 
Gene Names: OPG156RPO35A29L
EC: 2.7.7.6
UniProt
Find proteins for P21087 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP21087
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 22 kDa subunitD [auth E]185Vaccinia virusMutation(s): 0 
Gene Names: OPG103RPO22J4R
EC: 2.7.7.6
UniProt
Find proteins for P68608 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68608
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 19 kDa subunitE [auth F]164Vaccinia virusMutation(s): 0 
Gene Names: OPG131RPO19A5R
EC: 2.7.7.6
UniProt
Find proteins for P68610 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68610
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 18 kDa subunitF [auth G]161Vaccinia virusMutation(s): 0 
Gene Names: OPG119RPO18D7R
EC: 2.7.7.6
UniProt
Find proteins for P21034 (Vaccinia virus (strain Copenhagen))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Intermediate transcription factor 3 large subunitG [auth H]382Vaccinia virusMutation(s): 1 
Gene Names: OPG150VITF3LA23R
UniProt
Find proteins for P20998 (Vaccinia virus (strain Copenhagen))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Intermediate transcription factor 3 small subunitH [auth I]288Vaccinia virusMutation(s): 1 
Gene Names: OPG134VITF3SA8R
UniProt
Find proteins for P20986 (Vaccinia virus (strain Copenhagen))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 7 kDa subunitI [auth J]63Vaccinia virusMutation(s): 0 
Gene Names: OPG090RPO7G5.5R
EC: 2.7.7.6
UniProt
Find proteins for P68315 (Vaccinia virus (strain Copenhagen))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
mRNA-capping enzyme catalytic subunitK [auth O]844Vaccinia virusMutation(s): 2 
Gene Names: OPG113D1R
EC: 3.6.1.74 (PDB Primary Data), 2.7.7.50 (PDB Primary Data), 2.1.1.56 (PDB Primary Data)
UniProt
Find proteins for P20979 (Vaccinia virus (strain Copenhagen))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 30 kDa polypeptideL [auth S]259Vaccinia virusMutation(s): 0 
Gene Names: OPG066RPO30E4L
EC: 2.7.7.6
UniProt
Find proteins for P21082 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP21082
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Entity ID: 10
MoleculeChains LengthOrganismImage
Non-template DNA oligomerJ [auth N]70Vaccinia virus
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Entity ID: 13
MoleculeChains LengthOrganismImage
Template DNA oligomerM [auth T]70Vaccinia virus
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.64 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-22
    Type: Initial release