8P0B

Thogoto virus polymerase in Mode B conformation and bound to 32-mer loop promoter RNA

• PDB DOI: https://doi.org/10.2210/pdb8P0B/pdb
• EM Map EMD-17332: EMDB EMDataResource
• NAKB: 8P0B

• Classification: VIRAL PROTEIN
• Organism(s): Thogotovirus thogotoense
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2023-05-10 Released: 2024-05-22 
• Deposition Author(s): Cusack, S., Kouba, T.
• Funding Organization(s): French National Research Agency

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.87 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Thogoto virus polymerase

Kouba, T., Cusack, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 261.64 kDa 
• Atom Count: 10,807 
• Modelled Residue Count: 1,315 
• Deposited Residue Count: 2,165 
• Unique protein chains: 3
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polymerase acidic protein	A	622	Thogotovirus thogotoense	Mutation(s): 0  Gene Names: Segment 3
UniProt
Find proteins for P27194 (Thogoto virus (isolate SiAr 126)) Explore P27194  Go to UniProtKB:  P27194

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase catalytic subunit	B	710	Thogotovirus thogotoense	Mutation(s): 0  Gene Names: Segment 2 EC: 2.7.7.48
UniProt
Find proteins for O41353 (Thogoto virus (isolate SiAr 126)) Explore O41353  Go to UniProtKB:  O41353

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Polymerase basic protein 2	C	769	Thogotovirus thogotoense	Mutation(s): 0  Gene Names: Segment 1
UniProt
Find proteins for Q9YNA4 (Thogoto virus (isolate SiAr 126)) Explore Q9YNA4  Go to UniProtKB:  Q9YNA4

Entity ID: 4
Molecule	Chains	Length	Organism	Image
3'RNA	D [auth R], E [auth V]	32	Thogotovirus thogotoense

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.87 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-22 
Deposition Author(s): Cusack, S., Kouba, T.

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Funding Organization	Location	Grant Number
French National Research Agency	France	--

Revision History  

• Version 1.0: 2024-05-22
  Type: Initial release