Interdomain-linkers control conformational transitions in an SLC23 elevator transporter
Kuhn, B.T., Zoeller, J., Zimmermann, I., Gemeinhardt, T., Oezkul, D., Langer, J.D., Seeger, M.A., Geertsma, E.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uracil permease | 437 | Escherichia coli O157:H7 | Mutation(s): 1  Gene Names: uraA, Z3760, ECs3359 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P0AGM7 (Escherichia coli (strain K12)) Explore P0AGM7  Go to UniProtKB:  P0AGM7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0AGM7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sy45 | 154 | synthetic construct | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DMU Query on DMU | I [auth B], N [auth D] | DECYL-BETA-D-MALTOPYRANOSIDE C22 H42 O11 WOQQAWHSKSSAGF-WXFJLFHKSA-N | |||
BNG Query on BNG | F [auth A], G [auth A], J [auth C], K [auth C], L [auth C] | nonyl beta-D-glucopyranoside C15 H30 O6 QFAPUKLCALRPLH-UXXRCYHCSA-N | |||
1PE Query on 1PE | E [auth A], O [auth D] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N | |||
URA (Subject of Investigation/LOI) Query on URA | H [auth A], M [auth C] | URACIL C4 H4 N2 O2 ISAKRJDGNUQOIC-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 86.25 | α = 90 |
b = 116.82 | β = 100.485 |
c = 94.3 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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German Research Foundation (DFG) | Germany | SFB807-P23, CEF-MC |