Tv20S proteasome in the complex with marizomib
Silhan, J., Fajtova, P., O'Donoghue, A., Boura, E.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Family T1, proteasome alpha subunit, threonine peptidase | 241 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_267300 | ||
UniProt | |||||
Find proteins for A2F568 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F568  Go to UniProtKB:  A2F568 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F568 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Family T1, proteasome alpha subunit, threonine peptidase | 232 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_103780 | ||
UniProt | |||||
Find proteins for A2FJV7 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2FJV7  Go to UniProtKB:  A2FJV7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2FJV7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type | 251 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_058050 | ||
UniProt | |||||
Find proteins for A2FT79 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2FT79  Go to UniProtKB:  A2FT79 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2FT79 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type | 235 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_340740 | ||
UniProt | |||||
Find proteins for A2DTN3 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2DTN3  Go to UniProtKB:  A2DTN3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2DTN3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit alpha type | 251 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_293540 | ||
UniProt | |||||
Find proteins for A2FCM7 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2FCM7  Go to UniProtKB:  A2FCM7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2FCM7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Family T1, proteasome alpha subunit, threonine peptidase | 233 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_206040 | ||
UniProt | |||||
Find proteins for A2E1I9 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2E1I9  Go to UniProtKB:  A2E1I9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2E1I9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Family T1, proteasome alpha subunit, threonine peptidase | 240 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_185200 | ||
UniProt | |||||
Find proteins for A2D8G5 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2D8G5  Go to UniProtKB:  A2D8G5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2D8G5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta | 204 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_127250 | ||
UniProt | |||||
Find proteins for A2E7Z2 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2E7Z2  Go to UniProtKB:  A2E7Z2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2E7Z2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
proteasome endopeptidase complex | 244 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_231360 EC: 3.4.25.1 | ||
UniProt | |||||
Find proteins for A2F2T6 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F2T6  Go to UniProtKB:  A2F2T6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F2T6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta | 206 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_286960 | ||
UniProt | |||||
Find proteins for A2F3H9 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F3H9  Go to UniProtKB:  A2F3H9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F3H9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta | 191 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_403280 | ||
UniProt | |||||
Find proteins for A2F8W4 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F8W4  Go to UniProtKB:  A2F8W4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F8W4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta | 203 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_013010 | ||
UniProt | |||||
Find proteins for A2DD57 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2DD57  Go to UniProtKB:  A2DD57 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2DD57 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Proteasome subunit beta | AA [auth a], M | 224 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_152400 | |
UniProt | |||||
Find proteins for A2F716 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F716  Go to UniProtKB:  A2F716 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F716 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Family T1, proteasome beta subunit, threonine peptidase | BA [auth b], N | 244 | Trichomonas vaginalis G3 | Mutation(s): 0  Gene Names: TVAG_290960 | |
UniProt | |||||
Find proteins for A2F3X4 (Trichomonas vaginalis (strain ATCC PRA-98 / G3)) Explore A2F3X4  Go to UniProtKB:  A2F3X4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A2F3X4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SA1 (Subject of Investigation/LOI) Query on SA1 | CA [auth H], DA [auth I], EA [auth V], FA [auth W] | (3AR,6R,6AS)-6-((S)-((S)-CYCLOHEX-2-ENYL)(HYDROXY)METHYL)-6A-METHYL-4-OXO-HEXAHYDRO-2H-FURO[3,2-C]PYRROLE-6-CARBALDEHYDE C15 H21 N O4 YVABESCRHMBHJD-FUQNVFFISA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Funding Organization | Location | Grant Number |
---|---|---|
H2020 Marie Curie Actions of the European Commission | European Union | 846688 |