Download MendeleyStructural basis of epitope recognition by anti-alpha synuclein antibodies MJF14-6-4-2
Tars, K., Lieknina, I.To be published.
8OG0
Crystal structure of MJF14-6-4-2 Fab fragment in complex with epitope peptide
- PDB DOI: https://doi.org/10.2210/pdb8OG0/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Oryctolagus cuniculus, Homo sapiens
- Expression System: Oryctolagus cuniculus
- Mutation(s): No
- Deposited: 2023-03-17 Released: 2024-03-27
- Funding Organization(s): European Union (EU)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.231
- R-Value Work: 0.195
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab fragment light chain | A [auth L] | 216 | Oryctolagus cuniculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab fragment heavy chain | B [auth H] | 222 | Oryctolagus cuniculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha-synuclein | C [auth P] | 5 | Homo sapiens | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840 | |||||
PHAROS: P37840 GTEx: ENSG00000145335 | |||||
Entity Groups | |||||
| UniProt Group | P37840 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.231
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 37.484 | α = 90 |
| b = 66.7 | β = 90 |
| c = 167.167 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| autoPROC | data reduction |
| autoPROC | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-03-27 Deposition Author(s): Tars, K., Lieknina, I.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Union (EU) | European Union | OligoFIT |
Revision History (Full details and data files)
- Version 1.0: 2024-03-27
Type: Initial release
