The crystal structure of glycosaminoglycan lyase GAGase VII
Wei, L., Cao, H.Y., Li, F.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Heparinase II/III-like protein | 614 | Spirosoma fluviale | Mutation(s): 0  Gene Names: SAMN06269250_2316 | ||
UniProt | |||||
Find proteins for A0A286FIB6 (Spirosoma fluviale) Explore A0A286FIB6  Go to UniProtKB:  A0A286FIB6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A286FIB6 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | B [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A], D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.917 | α = 90 |
b = 82.096 | β = 106.59 |
c = 79.885 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XDS | data scaling |
AutoSol | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, China) | China | 31570071 |
National Science Foundation (NSF, China) | China | 31971201 |