8KHR

Cryo-EM structure of EBV gH/gL-gp42 in complex with fab 2C1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Potent human monoclonal antibodies targeting Epstein-Barr virus gp42 reveal vulnerable sites for virus infection.

Zhao, G.X.Fang, X.Y.Bu, G.L.Chen, S.J.Sun, C.Li, T.Xie, C.Wang, Y.Li, S.X.Meng, N.Feng, G.K.Zhong, Q.Kong, X.W.Liu, Z.Zeng, M.S.

(2024) Cell Rep Med 5: 101573-101573

  • DOI: https://doi.org/10.1016/j.xcrm.2024.101573
  • Primary Citation of Related Structures:  
    8KHR

  • PubMed Abstract: 

    Epstein-Barr virus (EBV) is linked to various malignancies and autoimmune diseases, posing a significant global health challenge due to the lack of specific treatments or vaccines. Despite its crucial role in EBV infection in B cells, the mechanisms of the glycoprotein gp42 remain elusive. In this study, we construct an antibody phage library from 100 EBV-positive individuals, leading to the identification of two human monoclonal antibodies, 2B7 and 2C1. These antibodies effectively neutralize EBV infection in vitro and in vivo while preserving gp42's interaction with the human leukocyte antigen class II (HLA-II) receptor. Structural analysis unveils their distinct binding epitopes on gp42, different from the HLA-II binding site. Furthermore, both 2B7 and 2C1 demonstrate potent neutralization of EBV infection in HLA-II-positive epithelial cells, expanding our understanding of gp42's role. Overall, this study introduces two human anti-gp42 antibodies with potential implications for developing EBV vaccines targeting gp42 epitopes, addressing a critical gap in EBV research.


  • Organizational Affiliation

    State Key Laboratory of Oncology in South China, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangdong Provincial Clinical Research Center for Cancer, Sun Yat-sen University Cancer Center, Guangzhou 510060, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble gp42A [auth C]196human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BZLF2
UniProt
Find proteins for P0C6Z5 (Epstein-Barr virus (strain GD1))
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Go to UniProtKB:  P0C6Z5
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UniProt GroupP0C6Z5
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
2C1 heavy chainB [auth H]111Homo sapiensMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
2C1 light chainC [auth L]107Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein HD [auth A]655human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BXLF2gH
UniProt
Find proteins for Q3KSQ3 (Epstein-Barr virus (strain GD1))
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UniProt GroupQ3KSQ3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoprotein LE [auth B]107human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BKRF2gL
UniProt
Find proteins for Q3KSS3 (Epstein-Barr virus (strain GD1))
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Go to UniProtKB:  Q3KSS3
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UniProt GroupQ3KSS3
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.25 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedChina--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-19
    Type: Initial release