8KGC | pdb_00008kgc

Cryo-EM structure of human NADK tetramer

PDB DOI: https://doi.org/10.2210/pdb8KGC/pdb
EM Map EMD-37217: EMDB EMDataResource

Classification: CYTOSOLIC PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-08-18 Released: 2024-08-21
Deposition Author(s): Zhang, P., Hu, M., Liu, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8KGC

This is version 1.0 of the entry. See complete history.

Literature

Regulation of NADK tetramer conformation and activity by cancer-associated mutants

Zhang, P., Hu, M., Liu, Z.

To be published.

Macromolecule Content

Total Structure Weight: 199.66 kDa
Atom Count: 9,026
Modeled Residue Count: 1,229
Deposited Residue Count: 1,812
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NAD kinase	A, B, C, D	453	Homo sapiens	Mutation(s): 0 Gene Names: NADK EC: 2.7.1.23
UniProt & NIH Common Fund Data Resources
Find proteins for O95544 (Homo sapiens) Explore O95544 Go to UniProtKB: O95544
PHAROS: O95544 GTEx: ENSG00000008130
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O95544
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.54 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5127

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-08-21

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	8227110337

Revision History (Full details and data files)

Version 1.0: 2024-08-21
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.