8KD8

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF N-terminal domain

• PDB DOI: https://doi.org/10.2210/pdb8KD8/pdb

• Classification: TRANSFERASE
• Organism(s): Aspergillus fumigatus Af293
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-08-09 Released: 2024-08-14 
• Deposition Author(s): Poonsiri, T., Demitri, N., Benini, S.
• Funding Organization(s): European Regional Development Fund

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.236 
• R-Value Work: 0.173 

Starting Model: in silico

Literature

N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF N-terminal domain

Poonsiri, T., Demitri, N., Benini, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 22.33 kDa 
• Atom Count: 1,414 
• Modelled Residue Count: 175 
• Deposited Residue Count: 200 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF	A	200	Aspergillus fumigatus Af293	Mutation(s): 0  Gene Names: sidF, AFUA_3G03400 EC: 2.3.1
UniProt
Find proteins for Q4WF55 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)) Explore Q4WF55  Go to UniProtKB:  Q4WF55

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.58 Å
• R-Value Free: 0.236 
• R-Value Work: 0.173 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.2	α = 90
b = 110.67	β = 90
c = 69.474	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MrBUMP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-14 
Deposition Author(s): Poonsiri, T., Demitri, N., Benini, S.

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Funding Organization	Location	Grant Number
European Regional Development Fund	European Union	IPN95

Revision History  

• Version 1.0: 2024-08-14
  Type: Initial release