YdiU regulates Salmonella Oxidative Stress by UMPylation of SodA
Zhai, L., Li, B.Q., Jia, H.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Superoxide dismutase [Mn] | 206 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0  Gene Names: sodA, STM4055 EC: 1.15.1.1 | ||
UniProt | |||||
Find proteins for P43019 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P43019  Go to UniProtKB:  P43019 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P43019 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 (Subject of Investigation/LOI) Query on SO4 | G [auth A], H [auth A], N [auth B], O [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL (Subject of Investigation/LOI) Query on GOL | C [auth A], E [auth A], L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO (Subject of Investigation/LOI) Query on EDO | D [auth A] I [auth A] J [auth A] K [auth B] P [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MN (Subject of Investigation/LOI) Query on MN | F [auth A], M [auth B] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.026 | α = 90 |
b = 45.128 | β = 90.16 |
c = 92.508 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
SCALA | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | No.31900124 |