8K6M

Structural complex of neuropeptide Y receptor 1

• PDB DOI: https://doi.org/10.2210/pdb8K6M/pdb
• EM Map EMD-36923: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens, Mus musculus
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 
• Membrane Protein: Yes  PDBTM


• Deposited: 2023-07-25 Released: 2024-07-31 
• Deposition Author(s): Shen, S.Y., Zhao, C., Shao, Z.H.
• Funding Organization(s): Other government

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural complex of neuropeptide Y receptor 1

Shen, S.Y., Shao, Z.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 6-mer - A1B1C1D1E1F1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 161 kDa 
• Atom Count: 9,327 
• Modelled Residue Count: 1,182 
• Deposited Residue Count: 1,433 
• Unique protein chains: 6

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(i) subunit alpha-2	A	355	Homo sapiens	Mutation(s): 5  Gene Names: GNAI2, GNAI2B Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P04899 (Homo sapiens) Explore P04899  Go to UniProtKB:  P04899
PHAROS:  P04899 GTEx:  ENSG00000114353

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	B	356	Homo sapiens	Mutation(s): 0  Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens) Explore P62873  Go to UniProtKB:  P62873
PHAROS:  P62873 GTEx:  ENSG00000078369

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2	C	71	Homo sapiens	Mutation(s): 0  Gene Names: GNG2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P59768 (Homo sapiens) Explore P59768  Go to UniProtKB:  P59768
PHAROS:  P59768 GTEx:  ENSG00000186469

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Neuropeptide Y receptor type 1	D	349	Homo sapiens	Mutation(s): 0  Gene Names: NPY1R, NPYR, NPYY1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P25929 (Homo sapiens) Explore P25929  Go to UniProtKB:  P25929
PHAROS:  P25929 GTEx:  ENSG00000164128

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
scFV16	E [auth S]	266	Mus musculus	Mutation(s): 0

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Neuropeptide Y	F [auth E]	36	Homo sapiens	Mutation(s): 0  Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P01303 (Homo sapiens) Explore P01303  Go to UniProtKB:  P01303
PHAROS:  P01303 GTEx:  ENSG00000122585

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-31 
Deposition Author(s): Shen, S.Y., Zhao, C., Shao, Z.H.

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Funding Organization	Location	Grant Number
Other government	China	--

Revision History  

• Version 1.0: 2024-07-31
  Type: Initial release