8K4O

Cryo-EM structure of Kaposi's Sarcoma-Associated Herpesvirus-G Protein-Coupled Receptor (KSHV-GPCR)in complex with CXC chemokine CXCL1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into KSHV-GPCR constitutive activation and CXCL1 chemokine recognition.

Liu, A.Liu, Y.Llinas Del Torrent Masachs, C.Zhang, W.Pardo, L.Ye, R.D.

(2024) Proc Natl Acad Sci U S A 121: e2403217121-e2403217121

  • DOI: https://doi.org/10.1073/pnas.2403217121
  • Primary Citation of Related Structures:  
    8K4O, 8K4P

  • PubMed Abstract: 

    Kaposi's sarcoma-associated herpesvirus (KSHV) encodes a viral G protein-coupled receptor, KSHV-GPCR, that contributes to KSHV immune evasion and pathogenesis of Kaposi's sarcoma. KSHV-GPCR shares a high similarity with CXC chemokine receptors CXCR2 and can be activated by selected chemokine ligands. Like other herpesvirus-encoded GPCRs, KSHV-GPCR is characterized by its constitutive activity by coupling to various G proteins. We investigated the structural basis of ligand-dependent and constitutive activation of KSHV-GPCR, obtaining high-resolution cryo-EM structures of KSHV-GPCR-Gi complexes with and without the bound CXCL1 chemokine. Analysis of the apo-KSHV-GPCR-Gi structure (2.81 Å) unraveled the involvement of extracellular loop 2 in constitutive activation of the receptor. In comparison, the CXCL1-bound KSHV-GPCR-Gi structure (3.01 Å) showed a two-site binding mode and provided detailed information of CXCL1 binding to a chemokine receptor. The dual activation mechanism employed by KSHV-GPCR represents an evolutionary adaptation for immune evasion and contributes to the pathogenesis of Kaposi's sarcoma. Together with results from functional assays that confirmed the structural models, these findings may help to develop therapeutic strategies for KSHV infection.


  • Organizational Affiliation

    Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
G protein-coupled receptorA [auth E]333Human gammaherpesvirus 8Mutation(s): 0 
Gene Names: ORF74
UniProt
Find proteins for Q76SF8 (Human herpesvirus 8)
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UniProt GroupQ76SF8
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Growth-regulated alpha proteinB [auth F]63Homo sapiensMutation(s): 0 
Gene Names: CXCL1GROGRO1GROAMGSASCYB1
UniProt & NIH Common Fund Data Resources
Find proteins for P09341 (Homo sapiens)
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PHAROS:  P09341
GTEx:  ENSG00000163739 
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UniProt GroupP09341
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1C [auth B]336Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I) subunit alpha-1D [auth C]350Homo sapiensMutation(s): 0 
Gene Names: gnai1
UniProt
Find proteins for A0A6P3VR35 (Clupea harengus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit gammaE [auth G]54Homo sapiensMutation(s): 0 
Gene Names: GNG2
UniProt
Find proteins for A0A663LQV7 (Athene cunicularia)
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UniProt GroupA0A663LQV7
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.01 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Structure summary
  • Version 1.2: 2024-12-11
    Changes: Data collection, Database references