8K0H

Structure of Cas5f-8f

PDB DOI: https://doi.org/10.2210/pdb8K0H/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Vibrio phage ICP1_2011_A
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-09 Released: 2024-07-10
Deposition Author(s): Feng, Y., Wang, H.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free: 0.234
R-Value Work: 0.192
R-Value Observed: 0.194

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Cas5f-8f

Feng, Y., Wang, H.

To be published.

Macromolecule Content

Total Structure Weight: 47.81 kDa
Atom Count: 3,189
Modelled Residue Count: 400
Deposited Residue Count: 427
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Csy1	A	179	Vibrio phage ICP1_2011_A	Mutation(s): 0 Gene Names: csy1, ICP12011A_088
UniProt
Find proteins for M1R2X3 (Vibrio phage ICP1_2011_A) Explore M1R2X3 Go to UniProtKB: M1R2X3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	M1R2X3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Csy2	B	248	Vibrio phage ICP1_2011_A	Mutation(s): 0 Gene Names: csy2, ICP12011A_087
UniProt
Find proteins for M1QWL5 (Vibrio phage ICP1_2011_A) Explore M1QWL5 Go to UniProtKB: M1QWL5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	M1QWL5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free: 0.234
R-Value Work: 0.192
R-Value Observed: 0.194
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.575	α = 90
b = 68.186	β = 109.72
c = 73.631	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
SCALEPACK	data scaling
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-07-10

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	32171274

Revision History (Full details and data files)

Version 1.0: 2024-07-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.