8JW3

The crystal structure of the viral terpene synthase from Orpheovirus IHUMI-LCC2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.178 

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Literature

Function and Structure of a Terpene Synthase Encoded in a Giant Virus Genome.

Jung, Y.Mitsuhashi, T.Sato, S.Senda, M.Senda, T.Fujita, M.

(2023) J Am Chem Soc 145: 25966-25970

  • DOI: https://doi.org/10.1021/jacs.3c10603
  • Primary Citation of Related Structures:  
    8JW3

  • PubMed Abstract: 

    Giant viruses are nonstandard viruses with large particles and genomes. While previous studies have shown that their genomes contain various sequences of interest, their genes related specifically to natural product biosynthesis remain unexplored. Here we analyze the function and structure of a terpene synthase encoded by the gene of a giant virus. The enzyme is phylogenetically separated from the terpene synthases of cellular organisms; however, heterologous gene expression revealed that it still functions as a terpene synthase and produces a cyclic terpene from a farnesyl diphosphate precursor. Crystallographic analysis revealed its protein structure, which is relatively compact but retains essential motifs of the terpene synthases. We thus suggest that like cellular organisms, giant viruses produce and utilize natural products for their ecological strategies.


  • Organizational Affiliation

    Department of Applied Chemistry, School of Engineering, The University of Tokyo, Mitsui Link Lab, Kashiwanoha 1, FS CREATION, 6-6-2 Kashiwanoha, Kashiwa, Chiba 277-0882, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Terpenoid synthase319Orpheovirus IHUMI-LCC2Mutation(s): 0 
Gene Names: ORPV_882
UniProt
Find proteins for A0A2I2L5I9 (Orpheovirus IHUMI-LCC2)
Explore A0A2I2L5I9 
Go to UniProtKB:  A0A2I2L5I9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2I2L5I9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.177 
  • R-Value Observed: 0.178 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.442α = 90
b = 46.763β = 116.341
c = 69.21γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
Cootmodel building
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Agency for Medical Research and Development (AMED)JapanJP21am0101001
Japan Society for the Promotion of Science (JSPS)JapanJP19H05461

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release