8JUI

Crystal structures of Cystathionine beta lyase from Bacillus cereus ATCC 14579

• PDB DOI: https://doi.org/10.2210/pdb8JUI/pdb

• Classification: LYASE
• Organism(s): Bacillus cereus ATCC 14579
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2023-06-26 Released: 2024-07-03 
• Deposition Author(s): Yu, H., Kim, K.-J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.233 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 

Starting Model: experimental

Literature

Crystal structures of Cystathionine beta lyase from Bacillus cereus ATCC 14579

Yu, H., Kim, K.-J.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 43.66 kDa 
• Atom Count: 3,067 
• Modelled Residue Count: 380 
• Deposited Residue Count: 395 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cystathionine beta-lyase	A	395	Bacillus cereus ATCC 14579	Mutation(s): 0  Gene Names: BC_4254 EC: 4.4.1.8
UniProt
Find proteins for Q818J6 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q818J6  Go to UniProtKB:  Q818J6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PLP (Subject of Investigation/LOI)	B [auth A]	PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.233 
• R-Value Work: 0.181 
• R-Value Observed: 0.183 
• Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 143.1	α = 90
b = 143.1	β = 90
c = 80.907	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
MOLREP	phasing
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-03 
Deposition Author(s): Yu, H., Kim, K.-J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-07-03
  Type: Initial release