8JSD

Alginate lyase mutant-D180G

PDB DOI: https://doi.org/10.2210/pdb8JSD/pdb

Classification: LYASE
Organism(s): Flavobacterium sp. UMI-01
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2023-06-19 Released: 2024-06-26
Deposition Author(s): Zhang, X., Pan, L.X., Yang, D.F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.41 Å
R-Value Free: 0.168
R-Value Work: 0.141

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Substrate-binding mode guided protein design of alginate lyase FlAlyA for altered end-product distribution

Zhang, X., Yang, D.F., Pan, L.X.

To be published.

Macromolecule Content

Total Structure Weight: 29.96 kDa
Atom Count: 2,414
Modelled Residue Count: 261
Deposited Residue Count: 261
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alginate lyase	A	261	Flavobacterium sp. UMI-01	Mutation(s): 1
UniProt
Find proteins for A0A068PC91 (Flavobacterium sp. UMI-01) Explore A0A068PC91 Go to UniProtKB: A0A068PC91
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A068PC91
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.41 Å
R-Value Free: 0.168
R-Value Work: 0.141
Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.12	α = 90
b = 72.12	β = 90
c = 52.06	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
autoPROC	data reduction
autoXDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31960203

Revision History (Full details and data files)

Version 1.0: 2024-06-26
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.