8JR1

Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587

• PDB DOI: https://doi.org/10.2210/pdb8JR1/pdb
• EM Map EMD-36590: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Mycobacterium tuberculosis
• Expression System: Mycolicibacterium smegmatis
• Mutation(s): No 
• Membrane Protein: Yes  PDBTM


• Deposited: 2023-06-15 Released: 2024-05-01 
• Deposition Author(s): Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.17 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of Mycobacterium tuberculosis ATP synthase

Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 10-mer - A9B1 Local Symmetry: Cyclic - C9  (Explore in 3D)
Local Stoichiometry: Homo 9-mer - A9 

Local Symmetry: Cyclic - C9  (Explore in 3D)
Local Stoichiometry: Homo 9-mer - A9 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 104.32 kDa 
• Atom Count: 7,089 
• Modelled Residue Count: 949 
• Deposited Residue Count: 979 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit c	A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	81	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names: atpE Membrane Entity: Yes
UniProt
Find proteins for P9WPS1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WPS1  Go to UniProtKB:  P9WPS1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ATP synthase subunit a	J [auth a]	250	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names:  atpB, ERS007657_00358, ERS007661_00092, ERS007663_00105, ERS007665_00910, ERS007670_00031, ERS007679_03316, ERS007681_03471, ERS007688_02939, ERS007703_00159, ERS007720_03212, ERS007722_00190, ERS007739_02359, ERS007741_03568, ERS024276_02583, ERS027646_02991, ERS027659_00329, ERS027661_00021, SAMEA2683035_01568 Membrane Entity: Yes
UniProt
Find proteins for P9WPV7 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WPV7  Go to UniProtKB:  P9WPV7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UTI	K [auth 4], L [auth 5], M [auth 6], N [auth 7], O [auth 8], P [auth 9], Q [auth a]	(1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol C30 H33 Br F N3 O5 JJEGOJPMKLRSPJ-POURPWNDSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.17 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-01 
Deposition Author(s): Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81520108019
National Natural Science Foundation of China (NSFC)	China	32100976
National Natural Science Foundation of China (NSFC)	China	82222042

Revision History  

• Version 1.0: 2024-05-01
  Type: Initial release