8JNT

RxLR effector RxLR19 from Phytophthora capsici

PDB DOI: https://doi.org/10.2210/pdb8JNT/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Phytophthora capsici
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-06-06 Released: 2024-06-12
Deposition Author(s): Sheng, H., Zhang, X.G.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.203
R-Value Work: 0.174
R-Value Observed: 0.175

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Phytophthora capsici effector RxLR19 manipulates AsA biosynthesis pathway to promote infection by binding host GME protein

Sheng, H., Zhang, X.G.

To be published.

Macromolecule Content

Total Structure Weight: 8.93 kDa
Atom Count: 661
Modelled Residue Count: 77
Deposited Residue Count: 77
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RxLR19781	A	77	Phytophthora capsici	Mutation(s): 0 Gene Names: RxLR19781
UniProt
Find proteins for A0A6M3YRV4 (Phytophthora capsici) Explore A0A6M3YRV4 Go to UniProtKB: A0A6M3YRV4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6M3YRV4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.203
R-Value Work: 0.174
R-Value Observed: 0.175
Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.741	α = 90
b = 49.741	β = 90
c = 61.17	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-06-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	CARS-25-03B

Revision History (Full details and data files)

Version 1.0: 2024-06-12
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.