Endo-deglycosylated hydroxynitrile lyase isozyme 5 mutant L331A from Prunus communis complexed with 2,2-dimethyl-4H-benzo[d][1,3]dioxine-6-carbaldehyde (Form B)
Zheng, Y.-C., Li, F.-L., Yu, H.-L., Xu, J.-H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
(R)-mandelonitrile lyase | 540 | Prunus dulcis | Mutation(s): 0  Gene Names: ALMOND_2B028509 EC: 4.1.2.10 | ![]() | |
UniProt | |||||
Find proteins for Q7XJE8 (Prunus dulcis) Explore Q7XJE8  Go to UniProtKB:  Q7XJE8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7XJE8 | ||||
Glycosylation | |||||
Glycosylation Sites: 6 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAD Query on FAD | J [auth A] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | |||
NAG Query on NAG | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
FQ3 (Subject of Investigation/LOI) Query on FQ3 | H [auth A] | 2,2-dimethyl-4H-1,3-benzodioxine-6-carbaldehyde C11 H12 O3 KNGWEAQJZJKFLI-UHFFFAOYSA-N | |||
PGE Query on PGE | I [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG Query on PEG | K [auth A], L [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | M [auth A], N [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.558 | α = 90 |
b = 91.312 | β = 90 |
c = 130.692 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-3000 | data scaling |
HKL-3000 | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |