8JIG

A Novel UHRF1-Targeted Compound

• PDB DOI: https://doi.org/10.2210/pdb8JIG/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-05-26 Released: 2024-05-29 
• Deposition Author(s): Chen, Y., Jiang, L.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.244 
• R-Value Work: 0.208 

Starting Model: experimental

Literature

A Novel UHRF1-Targeted Compound

Chen, Y., Jiang, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 48.14 kDa 
• Atom Count: 3,194 
• Modelled Residue Count: 386 
• Deposited Residue Count: 424 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
E3 ubiquitin-protein ligase UHRF1	A, B	212	Homo sapiens	Mutation(s): 0  Gene Names: UHRF1, ICBP90, NP95, RNF106 EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q96T88 (Homo sapiens) Explore Q96T88  Go to UniProtKB:  Q96T88
PHAROS:  Q96T88 GTEx:  ENSG00000276043

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
8JA (Subject of Investigation/LOI)	C [auth A], D [auth B]	N-[2,4-bis(oxidanylidene)-1H-pyrimidin-5-yl]-N'-oxidanyl-octanediamide C12 H18 N4 O5 XGGQCNFMILXRKW-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.244 
• R-Value Work: 0.208 
• Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.875	α = 90
b = 65.875	β = 90
c = 95.634	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
HKL-3000	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-29 
Deposition Author(s): Chen, Y., Jiang, L.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81572542, 81874096, 81974074, 82172654

Revision History  

• Version 1.0: 2024-05-29
  Type: Initial release