8JI1

Crystal structure of Ham1 from Plasmodium falciparum

PDB DOI: https://doi.org/10.2210/pdb8JI1/pdb

Classification: HYDROLASE
Organism(s): Plasmodium falciparum
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-05-25 Released: 2024-05-29
Deposition Author(s): Pramanik, A., Datta, S.
Funding Organization(s): Council of Scientific & Industrial Research (CSIR)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.257
R-Value Work: 0.195
R-Value Observed: 0.199

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Ham1 from Plasmodium falciparum

Pramanik, A., Datta, S.

To be published.

Macromolecule Content

Total Structure Weight: 46.22 kDa
Atom Count: 3,372
Modelled Residue Count: 388
Deposited Residue Count: 396
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inosine triphosphate pyrophosphatase	A, B	198	Plasmodium falciparum	Mutation(s): 0 Gene Names: MAL7P1.110 EC: 3.6.1.9
UniProt
Find proteins for Q8IBP3 (Plasmodium falciparum (isolate 3D7)) Explore Q8IBP3 Go to UniProtKB: Q8IBP3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8IBP3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.257
R-Value Work: 0.195
R-Value Observed: 0.199
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.294	α = 90
b = 73.658	β = 90
c = 111.989	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PROTEUM PLUS	data reduction
PROTEUM PLUS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	--

Revision History (Full details and data files)

Version 1.0: 2024-05-29
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.