8JFY

Cryo-EM structure of RDGC/Ca2+-CaM complex

PDB DOI: https://doi.org/10.2210/pdb8JFY/pdb
EM Map EMD-36219: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Drosophila melanogaster
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2023-05-19 Released: 2024-11-27
Deposition Author(s): Liu, Z.M., Liu, W., Wu, C., Liu, J.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.79 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of RDGC/Ca2+-CaM complex

Liu, Z.M., Liu, W., Wu, C., Liu, J.

To be published.

Macromolecule Content

Total Structure Weight: 172.22 kDa
Atom Count: 11,870
Modelled Residue Count: 1,472
Deposited Residue Count: 1,496
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AT15141p	A, C [auth B]	149	Drosophila melanogaster	Mutation(s): 0 Gene Names: Cam-RB
UniProt
Find proteins for C6SUZ2 (Drosophila melanogaster) Explore C6SUZ2 Go to UniProtKB: C6SUZ2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C6SUZ2
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein phosphatase rdgC	B [auth D], D [auth C]	599	Drosophila melanogaster	Mutation(s): 0 Gene Names: rdgC, CG44746 EC: 3.1.3.16
UniProt
Find proteins for P40421 (Drosophila melanogaster) Explore P40421 Go to UniProtKB: P40421
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P40421
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 (Subject of Investigation/LOI) Query on PO4 Download Ideal Coordinates CCD File SDF format, chain K [auth D] SDF format, chain T [auth C] MOL2 format, chain K [auth D] MOL2 format, chain T [auth C] mmCIF format, chain K [auth D] mmCIF format, chain T [auth C]	K [auth D], T [auth C]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain K [auth D] Focus chain T [auth C] Interactions & Density Focus chain K [auth D] Focus chain T [auth C]
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain I [auth D] SDF format, chain R [auth C] MOL2 format, chain I [auth D] MOL2 format, chain R [auth C] mmCIF format, chain I [auth D] mmCIF format, chain R [auth C]	I [auth D], R [auth C]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain I [auth D] Focus chain R [auth C] Interactions & Density Focus chain I [auth D] Focus chain R [auth C]
FE (Subject of Investigation/LOI) Query on FE Download Ideal Coordinates CCD File SDF format, chain J [auth D] SDF format, chain S [auth C] MOL2 format, chain J [auth D] MOL2 format, chain S [auth C] mmCIF format, chain J [auth D] mmCIF format, chain S [auth C]	J [auth D], S [auth C]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain J [auth D] Focus chain S [auth C] Interactions & Density Focus chain J [auth D] Focus chain S [auth C]
CA (Subject of Investigation/LOI) Query on CA Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain L [auth D] SDF format, chain M [auth D] SDF format, chain N [auth B] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain U [auth C] SDF format, chain V [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain L [auth D] MOL2 format, chain M [auth D] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain L [auth D] mmCIF format, chain M [auth D] mmCIF format, chain N [auth B] mmCIF format, chain O [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain U [auth C] mmCIF format, chain V [auth C]	E [auth A] F [auth A] G [auth A] H [auth A] L [auth D] E [auth A], F [auth A], G [auth A], H [auth A], L [auth D], M [auth D], N [auth B], O [auth B], P [auth B], Q [auth B], U [auth C], V [auth C]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain U [auth C] Focus chain V [auth C] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain L [auth D] Focus chain M [auth D] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain U [auth C] Focus chain V [auth C]