8J7N | pdb_00008j7n

The cryo-EM structure of Fe3+ induced alpha-syn fibril.

PDB DOI: https://doi.org/10.2210/pdb8J7N/pdb
EM Map EMD-36043: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-04-27 Released: 2024-05-01
Deposition Author(s): Zhao, Q.Y., Tao, Y.Q., Yan, F., Liu, C., Li, D.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

Validation slider image for 8J7N

This is version 1.2 of the entry. See complete history.

Literature

The cryo-EM structure of PBB3 bound TMEM106B fibril.

Zhao, Q.Y., Tao, Y.Q., Fan, Y., Liu, C., Li, D.

To be published.

Macromolecule Content

Total Structure Weight: 93.47 kDa
Atom Count: 3,258
Modeled Residue Count: 405
Deposited Residue Count: 822
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protein 106B	A, B, C	274	Homo sapiens	Mutation(s): 0 Gene Names: TMEM106B
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NUM4 (Homo sapiens) Explore Q9NUM4 Go to UniProtKB: Q9NUM4
PHAROS: Q9NUM4 GTEx: ENSG00000106460
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NUM4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-05-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-05-01
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Structure summary
Version 1.2: 2025-07-02
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.