8IY7

Cryo-EM structure of DIP-2I8I fibril polymorph1

PDB DOI: https://doi.org/10.2210/pdb8IY7/pdb
EM Map EMD-35816: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2023-04-04 Released: 2024-04-10
Deposition Author(s): Li, D.N., Ma, Y.Y., Li, D., Dai, B., Liu, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of DIP-2I8I fibril polymorph1

Li, D.N., Ma, Y.Y., Li, D., Dai, B., Liu, C.

To be published.

Macromolecule Content

Total Structure Weight: 25.86 kDa
Atom Count: 1,464
Modelled Residue Count: 216
Deposited Residue Count: 216
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-PHI-GLY-ASN-GLY-ASN-GLY-PHI-GLY	A B C D E A, B, C, D, E, F, G, H [auth J], I [auth M], J [auth P], K [auth S], L [auth V], M [auth H], N [auth K], O [auth N], P [auth Q], Q [auth T], R [auth W], S [auth I], T [auth L], U [auth O], V [auth R], W [auth U], X	9	Homo sapiens	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PHI Query on PHI	A B C D E A, B, C, D, E, F, G, H [auth J], I [auth M], J [auth P], K [auth S], L [auth V], M [auth H], N [auth K], O [auth N], P [auth Q], Q [auth T], R [auth W], S [auth I], T [auth L], U [auth O], V [auth R], W [auth U], X	L-PEPTIDE LINKING	C₉ H₁₀ I N O₂		PHE

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.71 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.15.2_3472:

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-04-10

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-04-10
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.