8IXW | pdb_00008ixw

Tilapia lake virus S8 segment

• PDB DOI: https://doi.org/10.2210/pdb8IXW/pdb

• Classification: VIRUS
• Organism(s): Tilapia lake virus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-04-03 Released: 2024-04-10 
• Deposition Author(s): Wang, Z.X., Zhang, Y.A., Ouyang, S.Y.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.203 (Depositor), 0.213 (DCC) 
• R-Value Work: 
  0.176 (Depositor) 
• R-Value Observed: 
  0.178 (Depositor) 

Literature

Structure and function of tilapia lake virus S8 segment

Wang, Z.X., Zhang, Y.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 39.8 kDa 
• Atom Count: 2,924 
• Modeled Residue Count: 330 
• Deposited Residue Count: 348 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chains: A,B	A, B	174	Tilapia lake virus	Mutation(s): 0
UniProt
Find proteins for A0A1Y9SHR5 (Tilapia lake virus) Explore A0A1Y9SHR5  Go to UniProtKB:  A0A1Y9SHR5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SEY (Subject of Investigation/LOI)	C [auth A], D [auth A], E [auth A], F [auth A], G [auth B], H [auth B]	selenourea C H4 N2 Se IYKVLICPFCEZOF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.203 (Depositor), 0.213 (DCC) 
• R-Value Work:  0.176 (Depositor) 
• R-Value Observed: 0.178 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.486	α = 106.865
b = 51.342	β = 108.918
c = 52.706	γ = 108.022

Software Package:

Software Name	Purpose
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing
PHENIX	refinement

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-04-10 
Deposition Author(s): Wang, Z.X., Zhang, Y.A., Ouyang, S.Y.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31725026, 82225028, 82172287

Revision History  

• Version 1.0: 2024-04-10
  Type: Initial release