8ISA | pdb_00008isa

CrtMLIKE with one GsPP molecule

PDB DOI: https://doi.org/10.2210/pdb8ISA/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Halobacillus halophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-20 Released: 2024-06-26
Deposition Author(s): Park, J.Y.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free:
0.199 (Depositor), 0.201 (DCC)
R-Value Work:
0.175 (Depositor), 0.175 (DCC)
R-Value Observed:
0.176 (Depositor)

Starting Model: other
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Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

CrtMLIKE with one GsPP molecule

Park, J.Y.

To be published.

Macromolecule Content

Total Structure Weight: 32.7 kDa
Atom Count: 2,606
Modeled Residue Count: 273
Deposited Residue Count: 278
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CrtM	A	278	Halobacillus halophilus	Mutation(s): 0 Gene Names: crtM
UniProt
Find proteins for B9UXM0 (Halobacillus halophilus) Explore B9UXM0 Go to UniProtKB: B9UXM0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	B9UXM0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GST (Subject of Investigation/LOI) Query on GST Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GERANYL S-THIOLODIPHOSPHATE C₁₀ H₂₀ O₆ P₂ S AKIXWSDUEPPMKM-JXMROGBWSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.199 (Depositor), 0.201 (DCC)
R-Value Work: 0.175 (Depositor), 0.175 (DCC)
R-Value Observed: 0.176 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.41	α = 90
b = 59.94	β = 90
c = 168.12	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	2020R1A2C300888911

Revision History (Full details and data files)

Version 1.0: 2024-06-26
Type: Initial release

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