8INH

ZjOGT3, flavonoid 7,4'-di-O-glycosyltransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 

Starting Model: experimental
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Literature

Functional characterization, structural basis, and regio-selectivity control of a promiscuous flavonoid 7,4'-di- O -glycosyltransferase from Ziziphus jujuba var. spinosa.

Wang, Z.L.Wei, W.Wang, H.D.Zhou, J.J.Wang, H.T.Chen, K.Wang, R.S.Li, F.D.Qiao, X.Zhou, H.Liang, Y.Ye, M.

(2023) Chem Sci 14: 4418-4425

  • DOI: https://doi.org/10.1039/d2sc06504e
  • Primary Citation of Related Structures:  
    8INH

  • PubMed Abstract: 

    A highly efficient and promiscuous 7,4'-di- O -glycosyltransferase ZjOGT3 was discovered from the medicinal plant Ziziphus jujuba var. spinosa . ZjOGT3 could sequentially catalyse 4'- and 7- O -glycosylation of flavones to produce 7,4'-di- O -glycosides with obvious regio-selectivity. For 7,4'-dihydroxyl flavanones and 3- O -glycosylated 7,4'-dihydroxyl flavones, ZjOGT3 selectively catalyses 7- O -glycosylation. The crystal structure of ZjOGT3 was solved. Structural analysis, DFT calculations, MD simulations, and site-directed mutagenesis reveal that the regio-selectivity is mainly controlled by the enzyme microenvironment for 7,4'-dihydroxyl flavones and 3- O -glycosylated 7,4'-dihydroxyl flavones. For 7,4'-dihydroxyl flavanones, the selectivity is mainly controlled by intrinsic reactivity. ZjOGT3 is the first plant flavonoid 7,4'-di- O -glycosyltransferase with a crystal structure. This work could help understand the catalytic mechanisms of multi-site glycosyltransferases and provides an efficient approach to synthesise O -glycosides with medicinal potential.


  • Organizational Affiliation

    State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University 38 Xueyuan Road Beijing 100191 China yemin@bjmu.edu.cn.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GlycosyltransferaseA [auth B],
B [auth A]
479Ziziphus jujuba var. spinosaMutation(s): 0 
Gene Names: FEM48_Zijuj09G0128800
EC: 2.4.1
UniProt
Find proteins for A0A978UT44 (Ziziphus jujuba var. spinosa)
Explore A0A978UT44 
Go to UniProtKB:  A0A978UT44
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A978UT44
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.73α = 90
b = 84.81β = 93.33
c = 103.63γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
XDSdata reduction
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81725023

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-19
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references