8INB

Cryo-EM structure of Cas12j-SF05-crRNA-dsDNA complex

PDB DOI: https://doi.org/10.2210/pdb8INB/pdb
NAKB: 8INB
EM Map EMD-35595: EMDB EMDataResource

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Biggievirus Mos11
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-03-09 Released: 2024-03-13
Deposition Author(s): Zhang, X., Duan, Z.Q., Zhu, J.K.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Molecular basis for DNA cleavage by the hypercompact Cas12j-SF05.

Duan, Z., Zhang, X., Zhang, J.T., Li, S., Liu, R., Sun, J., Zhao, Q., Jia, N., Jia, N., Zhu, J.K.

(2023) Cell Discov 9: 117-117

PubMed: 37990011 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-023-00612-5
Primary Citation of Related Structures:
8INB

Organizational Affiliation

Bellagen Biotechnology Co. Ltd., Jinan, Shandong, China.

Macromolecule Content

Total Structure Weight: 135.52 kDa
Atom Count: 5,321
Modelled Residue Count: 563
Deposited Residue Count: 904
Unique protein chains: 1
Unique nucleic acid chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas12j-SF05	A	737	Biggievirus Mos11	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
crRNA	B	57	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Length	Organism	Image
TS-DNA	C	55	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Length	Organism	Image
NTS-DNA	D	55	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-13

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-03-13
Type: Initial release
Version 1.1: 2024-03-20
Changes: Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.