8IB8

Human TRiC-PhLP2A-actin complex in the closed state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.42 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle.

Park, J.Kim, H.Gestaut, D.Lim, S.Opoku-Nsiah, K.A.Leitner, A.Frydman, J.Roh, S.H.

(2024) Nat Commun 15: 1007-1007

  • DOI: https://doi.org/10.1038/s41467-024-45242-x
  • Primary Citation of Related Structures:  
    8I1U, 8I6J, 8I9Q, 8I9U, 8IB8

  • PubMed Abstract: 

    Proper cellular proteostasis, essential for viability, requires a network of chaperones and cochaperones. ATP-dependent chaperonin TRiC/CCT partners with cochaperones prefoldin (PFD) and phosducin-like proteins (PhLPs) to facilitate folding of essential eukaryotic proteins. Using cryoEM and biochemical analyses, we determine the ATP-driven cycle of TRiC-PFD-PhLP2A interaction. PhLP2A binds to open apo-TRiC through polyvalent domain-specific contacts with its chamber's equatorial and apical regions. PhLP2A N-terminal H3-domain binding to subunits CCT3/4 apical domains displace PFD from TRiC. ATP-induced TRiC closure rearranges the contacts of PhLP2A domains within the closed chamber. In the presence of substrate, actin and PhLP2A segregate into opposing chambers, each binding to positively charged inner surface residues from CCT1/3/6/8. Notably, actin induces a conformational change in PhLP2A, causing its N-terminal helices to extend across the inter-ring interface to directly contact a hydrophobic groove in actin. Our findings reveal an ATP-driven PhLP2A structural rearrangement cycle within the TRiC chamber to facilitate folding.


  • Organizational Affiliation

    School of Biological Sciences, Institute of Molecular Biology and Genetics, Seoul National University, Seoul, South Korea.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit alpha
A, I
556Homo sapiensMutation(s): 0 
Gene Names: TCP1CCT1CCTA
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PHAROS:  P17987
GTEx:  ENSG00000120438 
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UniProt GroupP17987
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit beta
B, J
535Homo sapiensMutation(s): 0 
Gene Names: CCT299D8.1CCTB
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PHAROS:  P78371
GTEx:  ENSG00000166226 
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UniProt GroupP78371
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit gamma
C, K
545Homo sapiensMutation(s): 0 
Gene Names: CCT3CCTGTRIC5
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Find proteins for P49368 (Homo sapiens)
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GTEx:  ENSG00000163468 
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UniProt GroupP49368
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit delta
D, L
539Homo sapiensMutation(s): 0 
Gene Names: CCT4CCTDSRB
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GTEx:  ENSG00000115484 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit epsilon
E, M
541Homo sapiensMutation(s): 0 
Gene Names: CCT5CCTEKIAA0098
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Find proteins for P48643 (Homo sapiens)
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GTEx:  ENSG00000150753 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit zeta
F, N
531Homo sapiensMutation(s): 0 
Gene Names: CCT6ACCT6CCTZ
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GTEx:  ENSG00000146731 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit eta
G, O
543Homo sapiensMutation(s): 0 
Gene Names: CCT7CCTHNIP7-1
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GTEx:  ENSG00000135624 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
T-complex protein 1 subunit theta
H, P
548Homo sapiensMutation(s): 0 
Gene Names: CCT8C21orf112CCTQ
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Find proteins for P50990 (Homo sapiens)
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GTEx:  ENSG00000156261 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Phosducin-like protein 3239Homo sapiensMutation(s): 0 
Gene Names: PDCL3PhLP2A
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GTEx:  ENSG00000115539 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ACTB protein (Fragment)R [auth S]375Homo sapiensMutation(s): 0 
Gene Names: Actb
EC: 3.6.4
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GTEx:  ENSG00000075624 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.42 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.2.0
MODEL REFINEMENTPHENIX1.19
MODEL REFINEMENTCoot0.9.6

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of--

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Database references