8IAI

Structure of mammalian spectrin-actin junctional complex of membrane skeleton, State II, Global map

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Sus scrofa
  • Mutation(s): No 

  • Deposited: 2023-02-08 Released: 2023-05-03 
  • Deposition Author(s): Li, N., Chen, S., Gao, N.
  • Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of membrane skeleton organization in red blood cells.

Li, N.Chen, S.Xu, K.He, M.T.Dong, M.Q.Zhang, Q.C.Gao, N.

(2023) Cell 186: 1912-1929.e18

  • DOI: https://doi.org/10.1016/j.cell.2023.03.017
  • Primary Citation of Related Structures:  
    8IAH, 8IAI, 8IB2

  • PubMed Abstract: 

    The spectrin-based membrane skeleton is a ubiquitous membrane-associated two-dimensional cytoskeleton underneath the lipid membrane of metazoan cells. Mutations of skeleton proteins impair the mechanical strength and functions of the membrane, leading to several different types of human diseases. Here, we report the cryo-EM structures of the native spectrin-actin junctional complex (from porcine erythrocytes), which is a specialized short F-actin acting as the central organizational unit of the membrane skeleton. While an α-/β-adducin hetero-tetramer binds to the barbed end of F-actin as a flexible cap, tropomodulin and SH3BGRL2 together create an absolute cap at the pointed end. The junctional complex is strengthened by ring-like structures of dematin in the middle actin layers and by patterned periodic interactions with tropomyosin over its entire length. This work serves as a structural framework for understanding the assembly and dynamics of membrane skeleton and offers insights into mechanisms of various ubiquitous F-actin-binding factors in other F-actin systems.


  • Organizational Affiliation

    State Key Laboratory of Membrane Biology, Peking-Tsinghua Joint Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China; Changping Laboratory, Beijing 102206, China. Electronic address: ningningli@pku.edu.cn.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adducin 1A [auth 1],
B [auth 2],
H [auth 9]
744Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8D1Q0D0 (Sus scrofa)
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UniProt GroupA0A8D1Q0D0
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-adducinC [auth 3],
D [auth 4]
724Sus scrofaMutation(s): 0 
UniProt
Find proteins for I3L5B0 (Sus scrofa)
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UniProt GroupI3L5B0
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Dematin actin binding proteinE [auth 5],
F [auth 6],
G [auth 7]
405Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupF1RMC1
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Actin, cytoplasmic 1375Sus scrofaMutation(s): 0 
EC: 3.6.4
UniProt
Find proteins for Q6QAQ1 (Sus scrofa)
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UniProt GroupQ6QAQ1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Spectrin beta chain2,148Sus scrofaMutation(s): 0 
UniProt
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UniProt GroupA0A480J001
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomyosin-1.9BA [auth U]248Sus scrofaMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomyosin 3CA [auth V]248Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Tropomodulin-1DA [auth Y]359Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A4X1UDZ5 (Sus scrofa)
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
SH3 domain-binding glutamic acid-rich-like proteinEA [auth Z]107Sus scrofaMutation(s): 0 
UniProt
Find proteins for A0A8W4FER1 (Sus scrofa)
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP (Subject of Investigation/LOI)
Query on ADP

Download Ideal Coordinates CCD File 
FA [auth A]
GA [auth B]
HA [auth C]
IA [auth D]
JA [auth E]
FA [auth A],
GA [auth B],
HA [auth C],
IA [auth D],
JA [auth E],
KA [auth F],
LA [auth G],
MA [auth H],
NA [auth I],
OA [auth J],
PA [auth K]
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release
  • Version 1.1: 2023-05-10
    Changes: Database references
  • Version 1.2: 2024-07-03
    Changes: Data collection