8I5N

Rat Kir4.1 in complex with PIP2 and Lys05


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.85 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Pharmacological inhibition of Kir4.1 evokes rapid-onset antidepressant responses.

Zhou, X.Zhao, C.Xu, H.Xu, Y.Zhan, L.Wang, P.He, J.Lu, T.Gu, Y.Yang, Y.Xu, C.Chen, Y.Liu, Y.Zeng, Y.Tian, F.Chen, Q.Xie, X.Liu, J.Hu, H.Li, J.Zheng, Y.Guo, J.Gao, Z.

(2024) Nat Chem Biol 20: 857-866

  • DOI: https://doi.org/10.1038/s41589-024-01555-y
  • Primary Citation of Related Structures:  
    8I5M, 8I5N

  • PubMed Abstract: 

    Major depressive disorder, a prevalent and severe psychiatric condition, necessitates development of new and fast-acting antidepressants. Genetic suppression of astrocytic inwardly rectifying potassium channel 4.1 (Kir4.1) in the lateral habenula ameliorates depression-like phenotypes in mice. However, Kir4.1 remains an elusive drug target for depression. Here, we discovered a series of Kir4.1 inhibitors through high-throughput screening. Lys05, the most potent one thus far, effectively suppressed native Kir4.1 channels while displaying high selectivity against established targets for rapid-onset antidepressants. Cryogenic-electron microscopy structures combined with electrophysiological characterizations revealed Lys05 directly binds in the central cavity of Kir4.1. Notably, a single dose of Lys05 reversed the Kir4.1-driven depression-like phenotype and exerted rapid-onset (as early as 1 hour) antidepressant actions in multiple canonical depression rodent models with efficacy comparable to that of (S)-ketamine. Overall, we provided a proof of concept that Kir4.1 is a promising target for rapid-onset antidepressant effects.


  • Organizational Affiliation

    State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-sensitive inward rectifier potassium channel 10
A, B, C, D
345Rattus norvegicusMutation(s): 0 
Gene Names: Kcnj10Kab-2
Membrane Entity: Yes 
UniProt
Find proteins for P49655 (Rattus norvegicus)
Explore P49655 
Go to UniProtKB:  P49655
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49655
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.85 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education (MoE, China)ChinaFrontier Science Center for Brain Science & Brain-Machine Integration, Zhejiang University

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-09-11
    Changes: Data collection, Database references